Hb_002374_280

Information

Type -
Description -
Location Contig2374: 230336-231168
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24884: 230676-234749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_280 0.0 - - -
2 Hb_000487_420 0.0847656943 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
3 Hb_000181_120 0.09040343 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
4 Hb_004976_020 0.0911680694 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
5 Hb_000649_070 0.1000962911 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
6 Hb_028900_010 0.1036587864 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
7 Hb_012753_170 0.107018174 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
8 Hb_027760_080 0.1115573848 - - cytochrome P450, putative [Ricinus communis]
9 Hb_011609_050 0.1119844531 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
10 Hb_000334_270 0.1121285442 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_008887_020 0.1183614473 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
12 Hb_003849_250 0.11916889 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
13 Hb_001586_040 0.1204777557 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
14 Hb_006960_050 0.1239561059 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
15 Hb_002045_150 0.1240471923 - - histone acetyltransferase gcn5, putative [Ricinus communis]
16 Hb_002157_260 0.1255262264 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
17 Hb_009659_050 0.1281731982 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
18 Hb_000794_050 0.1288546973 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
19 Hb_000160_350 0.1293072884 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
20 Hb_000556_100 0.1303480809 - - PREDICTED: uncharacterized protein LOC104784782 isoform X2 [Camelina sativa]

Gene co-expression network

sample Hb_002374_280 Hb_002374_280 Hb_000487_420 Hb_000487_420 Hb_002374_280--Hb_000487_420 Hb_000181_120 Hb_000181_120 Hb_002374_280--Hb_000181_120 Hb_004976_020 Hb_004976_020 Hb_002374_280--Hb_004976_020 Hb_000649_070 Hb_000649_070 Hb_002374_280--Hb_000649_070 Hb_028900_010 Hb_028900_010 Hb_002374_280--Hb_028900_010 Hb_012753_170 Hb_012753_170 Hb_002374_280--Hb_012753_170 Hb_000640_310 Hb_000640_310 Hb_000487_420--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000487_420--Hb_001799_050 Hb_027760_080 Hb_027760_080 Hb_000487_420--Hb_027760_080 Hb_002045_150 Hb_002045_150 Hb_000487_420--Hb_002045_150 Hb_140049_030 Hb_140049_030 Hb_000487_420--Hb_140049_030 Hb_000160_350 Hb_000160_350 Hb_000487_420--Hb_000160_350 Hb_000261_220 Hb_000261_220 Hb_000181_120--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000181_120--Hb_031527_020 Hb_000181_120--Hb_000487_420 Hb_001083_050 Hb_001083_050 Hb_000181_120--Hb_001083_050 Hb_004055_150 Hb_004055_150 Hb_000181_120--Hb_004055_150 Hb_021422_010 Hb_021422_010 Hb_004976_020--Hb_021422_010 Hb_003849_060 Hb_003849_060 Hb_004976_020--Hb_003849_060 Hb_000808_250 Hb_000808_250 Hb_004976_020--Hb_000808_250 Hb_000359_330 Hb_000359_330 Hb_004976_020--Hb_000359_330 Hb_000334_270 Hb_000334_270 Hb_004976_020--Hb_000334_270 Hb_006623_020 Hb_006623_020 Hb_004976_020--Hb_006623_020 Hb_006960_050 Hb_006960_050 Hb_000649_070--Hb_006960_050 Hb_001329_130 Hb_001329_130 Hb_000649_070--Hb_001329_130 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000649_070--Hb_000334_270 Hb_020367_050 Hb_020367_050 Hb_000649_070--Hb_020367_050 Hb_003849_250 Hb_003849_250 Hb_028900_010--Hb_003849_250 Hb_000487_110 Hb_000487_110 Hb_028900_010--Hb_000487_110 Hb_000116_180 Hb_000116_180 Hb_028900_010--Hb_000116_180 Hb_002527_030 Hb_002527_030 Hb_028900_010--Hb_002527_030 Hb_008406_110 Hb_008406_110 Hb_028900_010--Hb_008406_110 Hb_008103_070 Hb_008103_070 Hb_012753_170--Hb_008103_070 Hb_001821_160 Hb_001821_160 Hb_012753_170--Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_012753_170--Hb_004785_100 Hb_012753_170--Hb_006960_050 Hb_001433_070 Hb_001433_070 Hb_012753_170--Hb_001433_070 Hb_002175_030 Hb_002175_030 Hb_012753_170--Hb_002175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76466 5.33373 3.69165 1.5776 7.02044 3.0984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76456 4.77074 1.30882 2.40671 3.43369

CAGE analysis