Hb_028900_010

Information

Type -
Description -
Location Contig28900: 4459-7031
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06240g
description POPTRDRAFT_553628; myb family transcription factor family protein
nr
ID XP_012068895.1
description PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24711 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30234: 4906-6014 , PASA_asmbl_30235: 4619-5503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028900_010 0.0 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
2 Hb_003849_250 0.089295252 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
3 Hb_000487_110 0.0959645373 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
4 Hb_000116_180 0.098015725 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
5 Hb_002374_280 0.1036587864 - - -
6 Hb_002527_030 0.1084097747 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
7 Hb_008406_110 0.1100532227 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
8 Hb_000003_290 0.1121367877 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
9 Hb_000794_050 0.1128040238 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
10 Hb_011609_050 0.1132986174 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
11 Hb_002367_130 0.113938347 - - UNC-50 family protein isoform 1 [Theobroma cacao]
12 Hb_001586_040 0.1150810726 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
13 Hb_021422_010 0.1162199901 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
14 Hb_004976_020 0.1166348377 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_005016_090 0.1174605062 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
16 Hb_000649_070 0.117522926 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
17 Hb_001352_090 0.1175402619 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
18 Hb_008785_040 0.118314583 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
19 Hb_001828_160 0.11865727 - - hypothetical protein F775_31105 [Aegilops tauschii]
20 Hb_001390_110 0.1199531424 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]

Gene co-expression network

sample Hb_028900_010 Hb_028900_010 Hb_003849_250 Hb_003849_250 Hb_028900_010--Hb_003849_250 Hb_000487_110 Hb_000487_110 Hb_028900_010--Hb_000487_110 Hb_000116_180 Hb_000116_180 Hb_028900_010--Hb_000116_180 Hb_002374_280 Hb_002374_280 Hb_028900_010--Hb_002374_280 Hb_002527_030 Hb_002527_030 Hb_028900_010--Hb_002527_030 Hb_008406_110 Hb_008406_110 Hb_028900_010--Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_003849_250--Hb_000116_180 Hb_000334_270 Hb_000334_270 Hb_003849_250--Hb_000334_270 Hb_000866_470 Hb_000866_470 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_000034_100 Hb_000034_100 Hb_000487_110--Hb_000034_100 Hb_000613_090 Hb_000613_090 Hb_000487_110--Hb_000613_090 Hb_000487_110--Hb_008406_110 Hb_000038_170 Hb_000038_170 Hb_000487_110--Hb_000038_170 Hb_005276_210 Hb_005276_210 Hb_000487_110--Hb_005276_210 Hb_054865_100 Hb_054865_100 Hb_000487_110--Hb_054865_100 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_000116_180--Hb_000866_470 Hb_000487_420 Hb_000487_420 Hb_002374_280--Hb_000487_420 Hb_000181_120 Hb_000181_120 Hb_002374_280--Hb_000181_120 Hb_004976_020 Hb_004976_020 Hb_002374_280--Hb_004976_020 Hb_000649_070 Hb_000649_070 Hb_002374_280--Hb_000649_070 Hb_012753_170 Hb_012753_170 Hb_002374_280--Hb_012753_170 Hb_000345_170 Hb_000345_170 Hb_002527_030--Hb_000345_170 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_000645_050 Hb_000645_050 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_000085_060 Hb_000085_060 Hb_002527_030--Hb_000085_060 Hb_001390_110 Hb_001390_110 Hb_008406_110--Hb_001390_110 Hb_008406_110--Hb_000926_190 Hb_008406_110--Hb_005276_210 Hb_008406_110--Hb_000334_270 Hb_007520_030 Hb_007520_030 Hb_008406_110--Hb_007520_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8697 6.99687 5.29813 2.76588 17.3963 7.94173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.7076 9.40423 4.33607 3.86627 8.33536

CAGE analysis