Hb_000866_470

Information

Type -
Description -
Location Contig866: 323831-329430
Sequence    

Annotation

kegg
ID vvi:100253419
description uncharacterized LOC100253419
nr
ID XP_012083431.1
description PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60997: 324065-329540 , PASA_asmbl_60998: 324059-329538 , PASA_asmbl_60999: 324286-327235 , PASA_asmbl_61000: 326367-327247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_470 0.0 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
2 Hb_000116_180 0.0709684179 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
3 Hb_003849_250 0.0749046055 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
4 Hb_000913_050 0.0766004929 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
5 Hb_030131_040 0.0776201039 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
6 Hb_000085_150 0.0786989089 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
7 Hb_001300_070 0.0801159245 - - OTU domain-containing protein 6B, putative [Ricinus communis]
8 Hb_005914_060 0.0818961123 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_000358_250 0.0830858244 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
10 Hb_005892_030 0.0833637516 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
11 Hb_002273_130 0.0847248006 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
12 Hb_009151_020 0.0865270959 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
13 Hb_010381_060 0.0879476121 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
14 Hb_000714_050 0.0880664817 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
15 Hb_000059_140 0.0898209884 - - rnase h, putative [Ricinus communis]
16 Hb_000059_150 0.090031439 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_006445_010 0.0907681885 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
18 Hb_002960_160 0.0909490337 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
19 Hb_002477_130 0.0910154299 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005895_040 0.0914613757 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]

Gene co-expression network

sample Hb_000866_470 Hb_000866_470 Hb_000116_180 Hb_000116_180 Hb_000866_470--Hb_000116_180 Hb_003849_250 Hb_003849_250 Hb_000866_470--Hb_003849_250 Hb_000913_050 Hb_000913_050 Hb_000866_470--Hb_000913_050 Hb_030131_040 Hb_030131_040 Hb_000866_470--Hb_030131_040 Hb_000085_150 Hb_000085_150 Hb_000866_470--Hb_000085_150 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_000116_180--Hb_003849_250 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_000334_270 Hb_000334_270 Hb_003849_250--Hb_000334_270 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_002273_130 Hb_002273_130 Hb_030131_040--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_030131_040--Hb_001341_120 Hb_001085_320 Hb_001085_320 Hb_030131_040--Hb_001085_320 Hb_030131_040--Hb_000913_050 Hb_001488_410 Hb_001488_410 Hb_030131_040--Hb_001488_410 Hb_001541_090 Hb_001541_090 Hb_030131_040--Hb_001541_090 Hb_001195_560 Hb_001195_560 Hb_000085_150--Hb_001195_560 Hb_003371_110 Hb_003371_110 Hb_000085_150--Hb_003371_110 Hb_010222_050 Hb_010222_050 Hb_000085_150--Hb_010222_050 Hb_002823_030 Hb_002823_030 Hb_000085_150--Hb_002823_030 Hb_000085_150--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001300_070--Hb_000076_270 Hb_001300_070--Hb_002273_130 Hb_001300_070--Hb_001341_120 Hb_000059_150 Hb_000059_150 Hb_001300_070--Hb_000059_150 Hb_008595_010 Hb_008595_010 Hb_001300_070--Hb_008595_010 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.91752 5.20106 4.59511 3.63926 11.7865 12.0505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03832 5.579 2.68288 4.1294 5.36407

CAGE analysis