Hb_008595_010

Information

Type -
Description -
Location Contig8595: 12649-19910
Sequence    

Annotation

kegg
ID cit:102621199
description pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like
nr
ID XP_012078859.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
swissprot
ID Q9M9X9
description Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=3 SV=1
trembl
ID V4TSD3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018682mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60679: 12742-13839 , PASA_asmbl_60681: 16113-17018 , PASA_asmbl_60682: 18068-18231 , PASA_asmbl_60683: 19180-19315 , PASA_asmbl_60684: 19441-19981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008595_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
2 Hb_001300_070 0.0787603159 - - OTU domain-containing protein 6B, putative [Ricinus communis]
3 Hb_000768_190 0.0827099032 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_000059_150 0.0846114985 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
5 Hb_002587_020 0.0848158502 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_010381_060 0.0901491967 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
7 Hb_000037_110 0.0914360766 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
8 Hb_000866_470 0.092135687 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
9 Hb_005895_040 0.092788558 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
10 Hb_000365_140 0.0932671445 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
11 Hb_011512_060 0.0938954497 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
12 Hb_000714_050 0.0939641004 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
13 Hb_006449_050 0.0950541524 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
14 Hb_000010_180 0.0951063021 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
15 Hb_002273_130 0.0951587911 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
16 Hb_002477_130 0.0970203679 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000441_180 0.1005651035 - - Early endosome antigen, putative [Ricinus communis]
18 Hb_000422_140 0.1009276292 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
19 Hb_005527_030 0.1009433786 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
20 Hb_008143_030 0.1016476676 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008595_010 Hb_008595_010 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_000037_110 Hb_000037_110 Hb_008595_010--Hb_000037_110 Hb_000076_270 Hb_000076_270 Hb_001300_070--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001300_070--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001300_070--Hb_001341_120 Hb_001300_070--Hb_000059_150 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_000173_510 Hb_000173_510 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_000059_150--Hb_002273_130 Hb_000600_070 Hb_000600_070 Hb_000059_150--Hb_000600_070 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010 Hb_001584_290 Hb_001584_290 Hb_002587_020--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_002587_020--Hb_008143_030 Hb_002652_040 Hb_002652_040 Hb_002587_020--Hb_002652_040 Hb_030827_030 Hb_030827_030 Hb_002587_020--Hb_030827_030 Hb_007407_040 Hb_007407_040 Hb_002587_020--Hb_007407_040 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39498 1.53917 1.59339 1.10885 5.64663 4.39392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93137 1.25373 1.53366 1.72104 2.04242

CAGE analysis