Hb_002070_070

Information

Type -
Description -
Location Contig2070: 81025-87444
Sequence    

Annotation

kegg
ID rcu:RCOM_0160690
description ATP binding protein, putative
nr
ID XP_002533675.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LZA4
description Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=2 SV=1
trembl
ID B9T606
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0160690 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21348: 81082-85369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002070_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000029_320 0.0609978388 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_015763_030 0.0748571655 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_490 0.0855295147 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
5 Hb_000209_070 0.0904197163 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
6 Hb_001040_120 0.091223689 - - allantoinase, putative [Ricinus communis]
7 Hb_004218_240 0.0921010312 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
8 Hb_022250_110 0.0921755322 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
9 Hb_000037_110 0.096905592 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
10 Hb_006114_020 0.0970749221 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010180_040 0.098280704 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
12 Hb_000300_580 0.101347532 - - PREDICTED: importin-5-like [Jatropha curcas]
13 Hb_000600_070 0.1013963841 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
14 Hb_000021_040 0.1016766822 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
15 Hb_000059_150 0.1023340839 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000441_180 0.1024708389 - - Early endosome antigen, putative [Ricinus communis]
17 Hb_002044_050 0.1033479489 - - -
18 Hb_000347_130 0.1039168813 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
19 Hb_001473_090 0.105200519 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_009535_020 0.1058588186 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002070_070 Hb_002070_070 Hb_000029_320 Hb_000029_320 Hb_002070_070--Hb_000029_320 Hb_015763_030 Hb_015763_030 Hb_002070_070--Hb_015763_030 Hb_000329_490 Hb_000329_490 Hb_002070_070--Hb_000329_490 Hb_000209_070 Hb_000209_070 Hb_002070_070--Hb_000209_070 Hb_001040_120 Hb_001040_120 Hb_002070_070--Hb_001040_120 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_001473_090 Hb_001473_090 Hb_000029_320--Hb_001473_090 Hb_000029_320--Hb_000329_490 Hb_003464_020 Hb_003464_020 Hb_015763_030--Hb_003464_020 Hb_021409_170 Hb_021409_170 Hb_015763_030--Hb_021409_170 Hb_001085_320 Hb_001085_320 Hb_015763_030--Hb_001085_320 Hb_010180_040 Hb_010180_040 Hb_015763_030--Hb_010180_040 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_000209_070--Hb_001473_090 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000209_070--Hb_003464_020 Hb_001040_120--Hb_000029_320 Hb_001040_120--Hb_010180_040 Hb_002159_040 Hb_002159_040 Hb_001040_120--Hb_002159_040 Hb_001040_120--Hb_015763_030 Hb_011497_010 Hb_011497_010 Hb_001040_120--Hb_011497_010 Hb_000023_190 Hb_000023_190 Hb_004218_240--Hb_000023_190 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_010381_060 Hb_010381_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9568 14.8043 8.37464 24.5054 43.0927 53.6321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.698 6.66852 13.6457 13.9023 15.5354

CAGE analysis