Hb_000436_040

Information

Type -
Description -
Location Contig436: 56271-78170
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14030g
description POPTRDRAFT_804102; hypothetical protein
nr
ID XP_012077722.1
description PREDICTED: transportin-1 [Jatropha curcas]
swissprot
ID Q8H0U4
description Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
trembl
ID A0A067KB00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13079 PE=4 SV=1
Gene Ontology
ID GO:0008536
description transportin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42451: 56217-78023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_040 0.0 - - PREDICTED: transportin-1 [Jatropha curcas]
2 Hb_021409_170 0.0634686755 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_000023_190 0.0668795164 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
4 Hb_000347_130 0.0723015798 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
5 Hb_003464_020 0.0736903179 - - srpk, putative [Ricinus communis]
6 Hb_004218_240 0.0757725069 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
7 Hb_002893_150 0.0764437769 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
8 Hb_025012_010 0.0776891472 - - PREDICTED: importin-4 [Vitis vinifera]
9 Hb_000531_090 0.0780507536 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
10 Hb_081879_030 0.0797011105 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
11 Hb_002903_080 0.0798382334 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
12 Hb_000567_050 0.0819396132 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
13 Hb_042487_010 0.0836017682 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
14 Hb_125092_020 0.0836610653 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
15 Hb_007904_220 0.0839196757 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
16 Hb_004450_010 0.0856960909 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
17 Hb_000048_140 0.0861502811 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
18 Hb_010931_040 0.0863434532 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
19 Hb_001221_040 0.0865127688 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
20 Hb_001322_210 0.0885150906 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000436_040 Hb_000436_040 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_021409_170--Hb_003464_020 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_021409_170--Hb_000023_190 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_003464_020--Hb_010381_060 Hb_003464_020--Hb_001488_410 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000531_090 Hb_000531_090 Hb_002893_150--Hb_000531_090 Hb_002893_150--Hb_000789_080 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6876 6.29713 4.39175 6.91166 14.993 25.6703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60201 5.13543 7.01307 9.75906 6.99312

CAGE analysis