Hb_021409_170

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig21409: 119712-127638
Sequence    

Annotation

kegg
ID cic:CICLE_v10019068mg
description hypothetical protein
nr
ID AIU41642.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8H0V6
description ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=1 SV=1
trembl
ID A0A097P9S0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCF3 PE=2 SV=1
Gene Ontology
ID GO:0005829
description abc transporter f family member 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22127: 119781-127545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_170 0.0 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
2 Hb_003464_020 0.0569927209 - - srpk, putative [Ricinus communis]
3 Hb_001221_040 0.0611856698 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
4 Hb_000436_040 0.0634686755 - - PREDICTED: transportin-1 [Jatropha curcas]
5 Hb_000023_190 0.0648723854 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_000046_440 0.0663843013 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
7 Hb_000789_080 0.066786222 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
8 Hb_000335_010 0.0676508541 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000567_050 0.0721342561 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
10 Hb_006114_020 0.0750098249 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015763_030 0.0754870044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002044_060 0.0760051974 - - elongation factor ts, putative [Ricinus communis]
13 Hb_000531_090 0.0772962549 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
14 Hb_004218_240 0.0775276023 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
15 Hb_004450_010 0.0780625998 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
16 Hb_000035_040 0.0807679304 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
17 Hb_002893_150 0.0811415926 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
18 Hb_010180_040 0.0836916497 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
19 Hb_002675_060 0.0841892105 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
20 Hb_000457_060 0.0854371829 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_021409_170 Hb_021409_170 Hb_003464_020 Hb_003464_020 Hb_021409_170--Hb_003464_020 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_000023_190 Hb_000023_190 Hb_021409_170--Hb_000023_190 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_001221_040--Hb_000046_440 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_000023_190--Hb_000567_050 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_000023_190--Hb_001488_410 Hb_000046_440--Hb_026099_010 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_000046_440--Hb_000567_050 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_000789_080--Hb_002044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.7314 27.626 19.8965 25.1667 65.4386 96.0074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0723 16.1004 22.9137 42.0329 25.0828

CAGE analysis