Hb_003464_020

Information

Type -
Description -
Location Contig3464: 18733-28086
Sequence    

Annotation

kegg
ID rcu:RCOM_0840470
description srpk, putative (EC:2.7.12.1)
nr
ID XP_002528633.1
description srpk, putative [Ricinus communis]
swissprot
ID P36616
description Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2
trembl
ID B9SRL4
description Srpk, putative OS=Ricinus communis GN=RCOM_0840470 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase dsk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36128: 18755-24383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_020 0.0 - - srpk, putative [Ricinus communis]
2 Hb_000023_190 0.0433911544 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
3 Hb_010381_060 0.0457997423 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
4 Hb_021409_170 0.0569927209 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_001488_410 0.0612529808 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_000567_050 0.0641923085 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
7 Hb_002044_060 0.068935866 - - elongation factor ts, putative [Ricinus communis]
8 Hb_004218_240 0.0712732231 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
9 Hb_010931_040 0.0716975618 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
10 Hb_000209_070 0.0718840763 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
11 Hb_000029_130 0.0724949747 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
12 Hb_002273_130 0.0729520934 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
13 Hb_004450_010 0.073436893 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
14 Hb_015763_030 0.0736512717 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000436_040 0.0736903179 - - PREDICTED: transportin-1 [Jatropha curcas]
16 Hb_000059_150 0.0742346082 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_033834_060 0.0743089999 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
18 Hb_001221_040 0.0754751907 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
19 Hb_000567_010 0.0756983447 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
20 Hb_001143_110 0.0758117579 - - hypothetical protein JCGZ_12107 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_020 Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_000023_190--Hb_001488_410 Hb_000023_190--Hb_021409_170 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_000567_050--Hb_002044_060 Hb_000567_050--Hb_010381_060 Hb_004370_030 Hb_004370_030 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_002044_060--Hb_000789_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.989 8.34861 7.76288 8.53525 19.58 24.0973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.058 6.03306 6.88639 12.5553 7.92918

CAGE analysis