Hb_002044_060

Information

Type -
Description -
Location Contig2044: 83998-88937
Sequence    

Annotation

kegg
ID rcu:RCOM_1211470
description elongation factor ts, putative
nr
ID XP_002524565.1
description elongation factor ts, putative [Ricinus communis]
swissprot
ID B9SEZ6
description Elongation factor Ts, mitochondrial OS=Ricinus communis GN=EFTS PE=3 SV=1
trembl
ID A0A067L9N5
description Elongation factor Ts, mitochondrial OS=Jatropha curcas GN=EFTS PE=3 SV=1
Gene Ontology
ID GO:0005739
description elongation factor mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21001: 84199-88110 , PASA_asmbl_21002: 86297-88926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_060 0.0 - - elongation factor ts, putative [Ricinus communis]
2 Hb_004370_030 0.0530241182 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
3 Hb_004450_010 0.0554555087 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
4 Hb_000567_050 0.0606151428 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
5 Hb_026099_010 0.063722367 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_002942_160 0.0649429453 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_000789_080 0.0666211035 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
8 Hb_003464_020 0.068935866 - - srpk, putative [Ricinus communis]
9 Hb_000768_110 0.0698841545 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
10 Hb_185679_010 0.0712070234 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
11 Hb_003581_120 0.0715338466 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
12 Hb_008695_120 0.0737701383 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
13 Hb_002960_160 0.0745386499 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
14 Hb_023386_040 0.0751370622 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
15 Hb_000364_080 0.0759993764 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_021409_170 0.0760051974 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_006252_040 0.076155926 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
18 Hb_000567_010 0.0761722244 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
19 Hb_005914_060 0.0763517793 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
20 Hb_024990_010 0.076401646 - - PREDICTED: la protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_060 Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_026099_010 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_000956_030 Hb_000956_030 Hb_004450_010--Hb_000956_030 Hb_004450_010--Hb_000768_110 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_002942_160--Hb_010931_080 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4352 14.0721 9.96718 10.5357 24.559 36.1497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9348 12.8304 8.71664 14.9053 9.35961

CAGE analysis