Hb_010931_080

Information

Type -
Description -
Location Contig10931: 75591-81365
Sequence    

Annotation

kegg
ID rcu:RCOM_0670010
description ubiquitin specific protease 39 and snrnp assembly factor, putative (EC:3.1.2.15)
nr
ID XP_012080870.1
description PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
swissprot
ID Q53GS9
description U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2
trembl
ID A0A067KFG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16247 PE=4 SV=1
Gene Ontology
ID GO:0008233
description u4 tri-snrnp-associated protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02827: 75640-76892 , PASA_asmbl_02828: 77092-80460 , PASA_asmbl_02829: 80497-81187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_080 0.0 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
2 Hb_002942_160 0.0558403741 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_004370_030 0.0631402696 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
4 Hb_000789_080 0.0685334547 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
5 Hb_026099_010 0.0694500751 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_004934_090 0.0704291009 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
7 Hb_003362_040 0.0729329155 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
8 Hb_003994_240 0.0729811969 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
9 Hb_009265_080 0.073311438 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
10 Hb_004096_030 0.0741749743 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
11 Hb_007632_020 0.0751364393 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
12 Hb_000046_440 0.0755364226 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
13 Hb_002798_040 0.0768309583 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
14 Hb_000134_090 0.077625784 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
15 Hb_007590_080 0.0778070434 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
16 Hb_000002_040 0.0779909661 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_008695_120 0.0810616616 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
18 Hb_004108_140 0.0821011137 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
19 Hb_002163_030 0.0826010014 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
20 Hb_002400_180 0.0836344748 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010931_080 Hb_010931_080 Hb_002942_160 Hb_002942_160 Hb_010931_080--Hb_002942_160 Hb_004370_030 Hb_004370_030 Hb_010931_080--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_010931_080--Hb_000789_080 Hb_026099_010 Hb_026099_010 Hb_010931_080--Hb_026099_010 Hb_004934_090 Hb_004934_090 Hb_010931_080--Hb_004934_090 Hb_003362_040 Hb_003362_040 Hb_010931_080--Hb_003362_040 Hb_002044_060 Hb_002044_060 Hb_002942_160--Hb_002044_060 Hb_002942_160--Hb_004370_030 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_004370_030--Hb_002044_060 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_026099_010 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_000789_080--Hb_002044_060 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_002044_060 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.7225 38.4191 20.8465 15.7404 47.9983 81.1304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.413 24.6125 33.9663 29.7508 22.1086

CAGE analysis