Hb_000915_050

Information

Type -
Description -
Location Contig915: 45437-50978
Sequence    

Annotation

kegg
ID rcu:RCOM_0017370
description hypothetical protein
nr
ID XP_002530736.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXL7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017370 PE=4 SV=1
Gene Ontology
ID GO:0051213
description 2-oxoglutarate and fe -dependent oxygenase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62208: 45309-50994 , PASA_asmbl_62209: 44799-45747 , PASA_asmbl_62210: 47609-48019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003362_040 0.0465694577 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
3 Hb_000244_250 0.0563128889 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_000184_130 0.057163255 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
5 Hb_004055_040 0.0641494997 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
6 Hb_000283_070 0.0746690498 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
7 Hb_004204_020 0.0751443937 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
8 Hb_004452_100 0.0774117248 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
9 Hb_002798_040 0.0775950748 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
10 Hb_011030_010 0.0777888102 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
11 Hb_000034_050 0.0780943625 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
12 Hb_000107_500 0.0804301925 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
13 Hb_002928_060 0.0805600832 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
14 Hb_001366_040 0.0809301199 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
15 Hb_027028_020 0.0815106843 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
16 Hb_000627_080 0.0818384977 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000370_030 0.0830191897 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
18 Hb_004225_020 0.0831833675 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000789_080 0.0835873797 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
20 Hb_022408_010 0.0845646739 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000915_050 Hb_000915_050 Hb_003362_040 Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000184_130--Hb_004204_020 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_004055_040--Hb_000244_250 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_006831_110 Hb_006831_110 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_004204_020--Hb_002039_010 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0049 32.4089 12.0663 20.2175 47.4772 73.6273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6514 20.249 42.5919 29.9168 16.7312

CAGE analysis