Hb_004204_020

Information

Type -
Description -
Location Contig4204: 25536-28381
Sequence    

Annotation

kegg
ID rcu:RCOM_1469960
description hypothetical protein
nr
ID XP_012080564.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41515: 25747-27337
cDNA
(Sanger)
(ID:Location)		 035_O15r.ab1: 28560-31123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
2 Hb_000703_220 0.058540353 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
3 Hb_002030_030 0.0634063193 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
4 Hb_002039_010 0.0683449078 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_000184_130 0.0689738363 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
6 Hb_003362_040 0.0698972129 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
7 Hb_090804_010 0.0699382682 - - ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000160_040 0.0739818575 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
9 Hb_000915_050 0.0751443937 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005839_060 0.0782764166 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
11 Hb_003728_030 0.0800435281 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
12 Hb_004370_030 0.0806255956 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
13 Hb_000166_110 0.0806877826 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
14 Hb_004724_200 0.0811474034 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_000062_240 0.0814088621 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
16 Hb_033642_010 0.0814620172 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
17 Hb_001001_060 0.0819013509 - - -
18 Hb_001017_040 0.0821522722 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
19 Hb_005883_050 0.08266197 - - PREDICTED: transportin-3 [Jatropha curcas]
20 Hb_039837_010 0.0838243558 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]

Gene co-expression network

sample Hb_004204_020 Hb_004204_020 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_000184_130 Hb_000184_130 Hb_004204_020--Hb_000184_130 Hb_003362_040 Hb_003362_040 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_005839_060 Hb_005839_060 Hb_000703_220--Hb_005839_060 Hb_009133_010 Hb_009133_010 Hb_000703_220--Hb_009133_010 Hb_011689_020 Hb_011689_020 Hb_000703_220--Hb_011689_020 Hb_000166_110 Hb_000166_110 Hb_000703_220--Hb_000166_110 Hb_004370_030 Hb_004370_030 Hb_000703_220--Hb_004370_030 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_000184_130--Hb_003362_040 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_090804_010--Hb_009627_010 Hb_011318_010 Hb_011318_010 Hb_090804_010--Hb_011318_010 Hb_090804_010--Hb_003362_040 Hb_002805_070 Hb_002805_070 Hb_090804_010--Hb_002805_070 Hb_000206_250 Hb_000206_250 Hb_090804_010--Hb_000206_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8102 8.64477 5.2347 6.13211 17.0395 26.9295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6506 10.7639 15.8653 14.7397 6.36553

CAGE analysis