Hb_002079_010

Information

Type -
Description -
Location Contig2079: 6055-9710
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01970g
description hypothetical protein
nr
ID XP_006368355.1
description hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GS09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21480: 6083-9705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002079_010 0.0 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
2 Hb_000103_180 0.0600946867 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_002030_030 0.0628707041 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
4 Hb_007426_030 0.0648097873 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
5 Hb_006400_060 0.0658183506 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
6 Hb_063090_010 0.0662502803 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_000179_020 0.0690354173 - - amidase, putative [Ricinus communis]
8 Hb_000483_200 0.0697744372 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_033642_010 0.0716892655 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
10 Hb_004724_200 0.074663345 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
11 Hb_011794_060 0.0772528388 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000808_230 0.0790890713 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_000373_240 0.0801258066 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
14 Hb_001199_020 0.0811622044 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
15 Hb_001771_090 0.0813985407 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
16 Hb_002391_300 0.0822210138 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
17 Hb_000058_100 0.0823920324 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
18 Hb_000889_020 0.0834975142 - - ribosome biogenesis protein brix, putative [Ricinus communis]
19 Hb_011673_030 0.0852016139 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
20 Hb_001006_140 0.0852541775 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002079_010 Hb_002079_010 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_007426_030 Hb_007426_030 Hb_002079_010--Hb_007426_030 Hb_006400_060 Hb_006400_060 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_000103_180--Hb_007426_030 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000483_200 Hb_000483_200 Hb_000103_180--Hb_000483_200 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_000808_230 Hb_000808_230 Hb_007426_030--Hb_000808_230 Hb_007426_030--Hb_000483_200 Hb_007426_030--Hb_006400_060 Hb_006400_060--Hb_000483_200 Hb_006400_060--Hb_000808_230 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_018838_030 Hb_018838_030 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_063090_010--Hb_006400_030 Hb_011794_060 Hb_011794_060 Hb_000179_020--Hb_011794_060 Hb_002174_060 Hb_002174_060 Hb_000179_020--Hb_002174_060 Hb_000889_020 Hb_000889_020 Hb_000179_020--Hb_000889_020 Hb_001866_110 Hb_001866_110 Hb_000179_020--Hb_001866_110 Hb_004195_280 Hb_004195_280 Hb_000179_020--Hb_004195_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1708 12.53 11.417 9.07294 36.9039 45.8953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5874 27.2188 28.5924 25.6585 14.6739

CAGE analysis