Hb_001019_060

Information

Type -
Description -
Location Contig1019: 73882-77165
Sequence    

Annotation

kegg
ID tcc:TCM_047036
description Eukaryotic release factor 1-3
nr
ID XP_012067421.1
description PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
swissprot
ID P35614
description Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=1 SV=1
trembl
ID A0A067L0F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26920 PE=4 SV=1
Gene Ontology
ID GO:0016149
description eukaryotic peptide chain release factor subunit 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00918: 74028-77469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_060 0.0 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
2 Hb_007426_030 0.0535404086 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
3 Hb_000103_180 0.0829644845 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
4 Hb_000538_200 0.0851721068 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
5 Hb_002079_010 0.0903888903 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
6 Hb_005489_110 0.0914389799 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
7 Hb_000808_230 0.0937842075 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
8 Hb_027450_010 0.0953846729 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
9 Hb_003506_080 0.0956987816 - - dipeptidyl peptidase IV, putative [Ricinus communis]
10 Hb_010436_020 0.0964507476 - - Dicer-like protein 4 [Morus notabilis]
11 Hb_001266_080 0.0987682669 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
12 Hb_001623_510 0.1011376102 - - transporter, putative [Ricinus communis]
13 Hb_001866_110 0.1012141168 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
14 Hb_011673_030 0.1012536585 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
15 Hb_004324_250 0.1017253372 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
16 Hb_005754_060 0.1021496434 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001157_060 0.1022729368 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
18 Hb_011794_060 0.1035190238 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001545_120 0.1035215204 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
20 Hb_000483_200 0.1041398057 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001019_060 Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_001019_060--Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_002079_010 Hb_002079_010 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_007426_030--Hb_000103_180 Hb_007426_030--Hb_000808_230 Hb_000483_200 Hb_000483_200 Hb_007426_030--Hb_000483_200 Hb_007426_030--Hb_002079_010 Hb_006400_060 Hb_006400_060 Hb_007426_030--Hb_006400_060 Hb_000103_180--Hb_002079_010 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000103_180--Hb_000483_200 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_003195_070 Hb_003195_070 Hb_005489_110--Hb_003195_070 Hb_005489_110--Hb_007426_030 Hb_001623_510 Hb_001623_510 Hb_005489_110--Hb_001623_510 Hb_005489_110--Hb_004109_090 Hb_009048_040 Hb_009048_040 Hb_005489_110--Hb_009048_040 Hb_001975_140 Hb_001975_140 Hb_005489_110--Hb_001975_140 Hb_000808_230--Hb_006400_060 Hb_000796_220 Hb_000796_220 Hb_000808_230--Hb_000796_220 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000170_210 Hb_000170_210 Hb_000808_230--Hb_000170_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0552 4.1064 3.3155 4.43746 14.8457 23.5318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81049 12.651 14.0645 9.33556 8.40946

CAGE analysis