Hb_011673_030

Information

Type -
Description -
Location Contig11673: 60543-65049
Sequence    

Annotation

kegg
ID rcu:RCOM_0575620
description serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID KDP26118.1
description hypothetical protein JCGZ_22219 [Jatropha curcas]
swissprot
ID Q5ZJH6
description Serine/threonine-protein kinase ULK3 OS=Gallus gallus GN=ULK3 PE=2 SV=1
trembl
ID A0A067JTG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22219 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ulk3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05194: 60702-65235 , PASA_asmbl_05195: 60702-65235 , PASA_asmbl_05197: 61428-61674 , PASA_asmbl_05198: 63821-65358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011673_030 0.0 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
2 Hb_000815_210 0.07157866 - - uncoupling protein 3, partial [Manihot esculenta]
3 Hb_003464_060 0.0720911367 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
4 Hb_001545_120 0.0724749007 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
5 Hb_001006_140 0.0728258496 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
6 Hb_002783_260 0.0742615643 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
7 Hb_003406_010 0.0763145167 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
8 Hb_000538_200 0.0765912982 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
9 Hb_007426_030 0.0766701403 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
10 Hb_004600_040 0.0785712994 - - -
11 Hb_004724_200 0.0823161382 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
12 Hb_000808_230 0.0836299855 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_000577_010 0.08485044 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
14 Hb_002079_010 0.0852016139 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
15 Hb_001866_110 0.0853820835 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_004096_030 0.0867612462 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
17 Hb_002030_030 0.0868020168 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
18 Hb_003057_110 0.0869860149 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
19 Hb_007951_050 0.0870457591 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000051_070 0.0879991859 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]

Gene co-expression network

sample Hb_011673_030 Hb_011673_030 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010 Hb_000051_070 Hb_000051_070 Hb_000815_210--Hb_000051_070 Hb_000538_200 Hb_000538_200 Hb_000815_210--Hb_000538_200 Hb_000815_210--Hb_003406_010 Hb_004600_040 Hb_004600_040 Hb_000815_210--Hb_004600_040 Hb_000608_030 Hb_000608_030 Hb_000815_210--Hb_000608_030 Hb_000768_040 Hb_000768_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_001545_120--Hb_004600_040 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280 Hb_001507_020 Hb_001507_020 Hb_002783_260--Hb_001507_020 Hb_002783_260--Hb_000538_200 Hb_003938_080 Hb_003938_080 Hb_002783_260--Hb_003938_080 Hb_001245_070 Hb_001245_070 Hb_002783_260--Hb_001245_070 Hb_001736_040 Hb_001736_040 Hb_002783_260--Hb_001736_040 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.36182 6.48354 3.87944 3.16062 11.9547 15.3917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7106 9.82932 11.1611 5.13923 6.67068

CAGE analysis