Hb_000120_790

Information

Type -
Description -
Location Contig120: 637560-639737
Sequence    

Annotation

kegg
ID rcu:RCOM_0874330
description heterogeneous nuclear ribonucleoprotein, putative
nr
ID XP_012065387.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
swissprot
ID Q5E9J1
description Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3
trembl
ID A0A067L5N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22393 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein h2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_790 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
2 Hb_000342_130 0.0553863206 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
3 Hb_007691_030 0.0605146875 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
4 Hb_003010_030 0.0617533146 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
5 Hb_000093_160 0.0618558387 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
6 Hb_001776_140 0.0636957415 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_001006_140 0.0652258452 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
8 Hb_000920_180 0.0671652397 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
9 Hb_002044_080 0.067345649 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
10 Hb_003525_010 0.0682205643 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
11 Hb_000243_030 0.0683011905 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_003428_030 0.0692325315 - - tRNA, putative [Ricinus communis]
13 Hb_000173_290 0.0704532496 - - guanylate kinase, putative [Ricinus communis]
14 Hb_007632_030 0.0707672982 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
15 Hb_028227_020 0.0709717609 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
16 Hb_005697_060 0.0727488027 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
17 Hb_004841_010 0.0731730802 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
18 Hb_000227_080 0.0740928114 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002518_280 0.0741599905 - - phosphate transporter [Manihot esculenta]
20 Hb_001828_190 0.0748415576 - - PREDICTED: phosducin-like protein 3 [Prunus mume]

Gene co-expression network

sample Hb_000120_790 Hb_000120_790 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_000173_290 Hb_000173_290 Hb_000342_130--Hb_000173_290 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_000093_160--Hb_003428_030 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000093_160--Hb_001258_090 Hb_000428_050 Hb_000428_050 Hb_001776_140--Hb_000428_050 Hb_001675_180 Hb_001675_180 Hb_001776_140--Hb_001675_180 Hb_001545_120 Hb_001545_120 Hb_001776_140--Hb_001545_120 Hb_044728_010 Hb_044728_010 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0607 37.3735 40.3812 42.4152 82.6125 83.462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.3051 97.2437 63.5093 42.4395 52.1662

CAGE analysis