Hb_096563_010

Information

Type -
Description -
Location Contig96563: 1396-2569
Sequence    

Annotation

kegg
ID pmum:103321170
description cytoplasmic tRNA 2-thiolation protein 1
nr
ID XP_008221174.1
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
swissprot
ID O64862
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2
trembl
ID M5XB75
description Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica GN=NCS6 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63874: 1874-2647
cDNA
(Sanger)
(ID:Location)		 017_C21.ab1: 1874-2645

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096563_010 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
2 Hb_000661_250 0.050379252 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_003010_030 0.0526388566 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
4 Hb_001301_160 0.0545654041 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
5 Hb_001259_090 0.0547568661 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
6 Hb_000059_330 0.0563430112 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_000210_180 0.0582518428 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_000093_160 0.059238169 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
9 Hb_001358_030 0.060836126 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
10 Hb_000041_270 0.0613438342 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
11 Hb_020956_020 0.0630069539 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
12 Hb_002660_080 0.0635886168 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_001595_030 0.0639876453 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
14 Hb_003417_020 0.0645626226 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
15 Hb_003126_050 0.064598997 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
16 Hb_001226_160 0.0653851322 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
17 Hb_000640_240 0.0664794301 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
18 Hb_001305_010 0.0669696679 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_000656_400 0.0673986878 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
20 Hb_007691_030 0.0679913723 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_096563_010 Hb_096563_010 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_000661_250--Hb_001259_090 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_002007_060 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_000041_270 Hb_000041_270 Hb_000210_180--Hb_000041_270 Hb_018838_030 Hb_018838_030 Hb_000210_180--Hb_018838_030 Hb_000210_180--Hb_000656_400 Hb_006332_020 Hb_006332_020 Hb_000210_180--Hb_006332_020 Hb_001242_060 Hb_001242_060 Hb_000210_180--Hb_001242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9925 11.1936 9.00379 10.0053 16.5844 19.6952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8394 22.9066 13.6404 9.22038 6.66169

CAGE analysis