Hb_001301_160

Information

Type -
Description -
Location Contig1301: 121439-124635
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44960g
description hypothetical protein
nr
ID XP_012070796.1
description PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
swissprot
ID Q9FFU1
description CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1
trembl
ID A0A067KVT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00865 PE=4 SV=1
Gene Ontology
ID GO:0003723
description crs2-associated factor mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09012: 123218-123712 , PASA_asmbl_09013: 123253-123873 , PASA_asmbl_09014: 123253-123873 , PASA_asmbl_09015: 123969-125081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_160 0.0 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
2 Hb_096563_010 0.0545654041 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
3 Hb_002007_060 0.0615458633 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
4 Hb_011571_020 0.0625615466 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
5 Hb_001511_020 0.0649849603 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
6 Hb_000661_250 0.0666100776 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
7 Hb_000230_200 0.0674743981 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_003001_140 0.0679946936 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
9 Hb_006185_050 0.0681342083 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
10 Hb_000089_220 0.0687262634 - - PREDICTED: protein FAM133-like [Populus euphratica]
11 Hb_001305_010 0.0691886377 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
12 Hb_135545_010 0.0706371212 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_006332_020 0.0707794169 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_002375_020 0.0718196696 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
15 Hb_001377_290 0.0719470936 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
16 Hb_000398_180 0.0728492379 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
17 Hb_001226_160 0.0745545491 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
18 Hb_001252_110 0.0748285891 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
19 Hb_011689_080 0.0753164554 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
20 Hb_001259_090 0.0761431137 - - hypothetical protein B456_005G056700 [Gossypium raimondii]

Gene co-expression network

sample Hb_001301_160 Hb_001301_160 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_002007_060--Hb_001259_090 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_011360_140 Hb_011360_140 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040 Hb_001439_150 Hb_001439_150 Hb_001511_020--Hb_001439_150 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_002685_140 Hb_002685_140 Hb_001511_020--Hb_002685_140 Hb_000661_250--Hb_001259_090 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.27532 3.4738 2.7863 2.56079 4.72396 6.42104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90406 6.85359 5.13395 2.2671 1.35976

CAGE analysis