Hb_023226_040

Information

Type -
Description -
Location Contig23226: 56593-58512
Sequence    

Annotation

kegg
ID vvi:100260100
description kxDL motif-containing protein 1
nr
ID XP_012075628.1
description PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
swissprot
ID Q6DBR9
description KxDL motif-containing protein 1 OS=Danio rerio GN=kxd1 PE=2 SV=1
trembl
ID A0A067KFC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09224 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24419: 56709-58489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_040 0.0 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
2 Hb_002007_060 0.0537771864 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
3 Hb_000866_270 0.0571549096 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_000023_230 0.0610696888 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
5 Hb_004657_050 0.0634665826 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
6 Hb_000000_160 0.0663889583 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_028995_040 0.0674579555 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
8 Hb_002301_140 0.0695830812 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
9 Hb_145880_030 0.0699185706 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
10 Hb_003994_180 0.0745616715 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
11 Hb_001259_090 0.0769492138 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
12 Hb_005000_210 0.0776921227 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
13 Hb_001138_050 0.0781894407 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
14 Hb_001235_190 0.0785501595 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_000494_020 0.0800945705 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
16 Hb_002030_040 0.0823483337 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
17 Hb_000661_250 0.0836475589 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
18 Hb_000141_040 0.0839751161 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
19 Hb_010407_040 0.0847713363 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
20 Hb_004204_120 0.0851705302 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_023226_040 Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_023226_040--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_000000_160 Hb_000000_160 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_000866_270--Hb_001259_090 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001257_080 Hb_001257_080 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_002529_100 Hb_002529_100 Hb_000023_230--Hb_002529_100 Hb_000023_230--Hb_004657_050 Hb_004204_120 Hb_004204_120 Hb_000023_230--Hb_004204_120 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_004657_050--Hb_000866_270 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.983 56.5734 48.0701 42.4981 81.8727 86.6275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.156 148.322 80.43 37.3401 22.1396

CAGE analysis