Hb_011224_110

Information

Type -
Description -
Location Contig11224: 51562-55049
Sequence    

Annotation

kegg
ID rcu:RCOM_0523340
description Pre-mRNA-splicing factor cwc15, putative
nr
ID XP_002522799.1
description Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
swissprot
ID Q6NUB2
description Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1
trembl
ID B9S9Y0
description Pre-mRNA-splicing factor cwc15, putative OS=Ricinus communis GN=RCOM_0523340 PE=4 SV=1
Gene Ontology
ID GO:0005681
description protein cwc15 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03695: 51596-55082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_110 0.0 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
2 Hb_153112_020 0.0622208227 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
3 Hb_004657_050 0.0646702563 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
4 Hb_002163_020 0.0702008414 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
5 Hb_001277_070 0.071115916 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
6 Hb_000331_080 0.0727983519 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
7 Hb_005539_350 0.0772017377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_112798_030 0.082383115 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004994_100 0.0839977083 - - acyl-CoA thioesterase, putative [Ricinus communis]
10 Hb_028995_040 0.0845375845 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
11 Hb_003207_190 0.084812641 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
12 Hb_000167_140 0.0863914322 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
13 Hb_000270_270 0.0873551839 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
14 Hb_000123_120 0.08778296 - - actin depolymerizing factor 4 [Hevea brasiliensis]
15 Hb_000840_030 0.0878026622 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
16 Hb_000608_370 0.089195813 - - acyl-carrier-protein [Triadica sebifera]
17 Hb_044662_070 0.0897807771 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
18 Hb_129204_030 0.0903160415 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_001277_330 0.0905598215 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
20 Hb_001552_020 0.0922402193 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]

Gene co-expression network

sample Hb_011224_110 Hb_011224_110 Hb_153112_020 Hb_153112_020 Hb_011224_110--Hb_153112_020 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_000331_080 Hb_000331_080 Hb_011224_110--Hb_000331_080 Hb_005539_350 Hb_005539_350 Hb_011224_110--Hb_005539_350 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_002007_060 Hb_002007_060 Hb_004657_050--Hb_002007_060 Hb_004931_090 Hb_004931_090 Hb_004657_050--Hb_004931_090 Hb_000866_270 Hb_000866_270 Hb_004657_050--Hb_000866_270 Hb_029866_060 Hb_029866_060 Hb_002163_020--Hb_029866_060 Hb_002284_010 Hb_002284_010 Hb_002163_020--Hb_002284_010 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_005941_040 Hb_005941_040 Hb_002163_020--Hb_005941_040 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_012505_010 Hb_012505_010 Hb_001277_070--Hb_012505_010 Hb_000608_370 Hb_000608_370 Hb_001277_070--Hb_000608_370 Hb_129204_030 Hb_129204_030 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_001277_070--Hb_153112_020 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_005539_350--Hb_002007_060 Hb_005539_350--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
184.369 81.6709 101.134 58.328 141.245 117.568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
232.521 226.42 238.211 59.2948 65.9938

CAGE analysis