Hb_004994_100

Information

Type -
Description -
Location Contig4994: 59575-60764
Sequence    

Annotation

kegg
ID rcu:RCOM_1614430
description acyl-CoA thioesterase, putative
nr
ID XP_002511810.1
description acyl-CoA thioesterase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDM1
description Acyl-CoA thioesterase, putative OS=Ricinus communis GN=RCOM_1614430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45628: 59715-60731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_100 0.0 - - acyl-CoA thioesterase, putative [Ricinus communis]
2 Hb_000331_080 0.0561476673 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
3 Hb_153112_020 0.0599146678 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
4 Hb_002477_070 0.0764133689 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
5 Hb_001277_330 0.0769645328 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
6 Hb_034299_050 0.0770368486 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
7 Hb_026527_030 0.0777925122 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_012053_070 0.0788404333 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
9 Hb_001105_030 0.0797724882 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_009838_080 0.0799690398 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_000787_050 0.0806324322 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
12 Hb_008878_030 0.0831801929 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
13 Hb_002609_020 0.0837482322 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
14 Hb_001059_030 0.0838165936 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
15 Hb_011224_110 0.0839977083 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
16 Hb_158467_010 0.0840816594 - - transporter, putative [Ricinus communis]
17 Hb_032202_190 0.086091403 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
18 Hb_012725_050 0.0870925662 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
19 Hb_010422_060 0.0875188326 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
20 Hb_000240_090 0.0881307455 - - Rab5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004994_100 Hb_004994_100 Hb_000331_080 Hb_000331_080 Hb_004994_100--Hb_000331_080 Hb_153112_020 Hb_153112_020 Hb_004994_100--Hb_153112_020 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_001277_330 Hb_001277_330 Hb_004994_100--Hb_001277_330 Hb_034299_050 Hb_034299_050 Hb_004994_100--Hb_034299_050 Hb_026527_030 Hb_026527_030 Hb_004994_100--Hb_026527_030 Hb_000331_080--Hb_153112_020 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_153112_020--Hb_000840_030 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_034299_050--Hb_000331_080 Hb_021596_090 Hb_021596_090 Hb_034299_050--Hb_021596_090 Hb_034299_050--Hb_008878_030 Hb_000201_120 Hb_000201_120 Hb_034299_050--Hb_000201_120 Hb_000270_370 Hb_000270_370 Hb_034299_050--Hb_000270_370 Hb_026527_030--Hb_000331_080 Hb_024185_020 Hb_024185_020 Hb_026527_030--Hb_024185_020 Hb_002253_070 Hb_002253_070 Hb_026527_030--Hb_002253_070 Hb_009954_040 Hb_009954_040 Hb_026527_030--Hb_009954_040 Hb_002685_020 Hb_002685_020 Hb_026527_030--Hb_002685_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4325 4.13387 5.9356 5.95207 13.1564 8.05733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6475 16.6789 15.7936 6.59873 5.68199

CAGE analysis