Hb_153112_020

Information

Type -
Description -
Location Contig153112: 16075-23662
Sequence    

Annotation

kegg
ID rcu:RCOM_0866610
description Surfeit locus protein, putative
nr
ID XP_012082582.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
swissprot
ID Q8LCH5
description Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana GN=MED22B PE=1 SV=1
trembl
ID A0A067KAJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16659 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 22b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13164: 19054-23551
cDNA
(Sanger)
(ID:Location)		 018_B06.ab1: 19054-23273

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153112_020 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
2 Hb_000331_080 0.0450331036 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
3 Hb_000840_030 0.0591053573 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
4 Hb_004994_100 0.0599146678 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_011224_110 0.0622208227 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
6 Hb_003207_190 0.0657142186 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
7 Hb_009838_080 0.0665090943 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
8 Hb_000270_270 0.068647958 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
9 Hb_005539_350 0.0689300376 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008878_030 0.0692603739 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
11 Hb_002874_190 0.0706925645 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
12 Hb_001821_010 0.0732320469 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
13 Hb_000834_270 0.0739519426 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
14 Hb_006541_030 0.0747425932 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
15 Hb_012725_050 0.0758916893 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
16 Hb_004837_140 0.0763940053 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
17 Hb_004048_110 0.0766563427 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
18 Hb_112798_030 0.0777371129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_158467_010 0.079818363 - - transporter, putative [Ricinus communis]
20 Hb_004735_040 0.0805960312 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_153112_020 Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_001277_330 Hb_001277_330 Hb_004994_100--Hb_001277_330 Hb_034299_050 Hb_034299_050 Hb_004994_100--Hb_034299_050 Hb_026527_030 Hb_026527_030 Hb_004994_100--Hb_026527_030 Hb_004657_050 Hb_004657_050 Hb_011224_110--Hb_004657_050 Hb_002163_020 Hb_002163_020 Hb_011224_110--Hb_002163_020 Hb_001277_070 Hb_001277_070 Hb_011224_110--Hb_001277_070 Hb_011224_110--Hb_000331_080 Hb_011224_110--Hb_005539_350 Hb_000671_090 Hb_000671_090 Hb_003207_190--Hb_000671_090 Hb_003207_190--Hb_011224_110 Hb_002284_010 Hb_002284_010 Hb_003207_190--Hb_002284_010 Hb_003207_190--Hb_000331_080 Hb_000834_270 Hb_000834_270 Hb_003207_190--Hb_000834_270 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1897 7.55718 12.8368 9.00322 19.978 20.4279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.058 34.2531 30.4425 10.357 9.86189

CAGE analysis