Hb_026527_030

Information

Type -
Description -
Location Contig26527: 13613-23905
Sequence    

Annotation

kegg
ID cic:CICLE_v10019993mg
description hypothetical protein
nr
ID XP_012074690.1
description PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q557M8
description General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1
trembl
ID A0A067KL60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10470 PE=4 SV=1
Gene Ontology
ID GO:0003743
description general transcription factor iie subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27736: 22906-23872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026527_030 0.0 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
2 Hb_000331_080 0.0681163897 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
3 Hb_024185_020 0.0691735473 - - -
4 Hb_002253_070 0.0758715269 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
5 Hb_009954_040 0.077633291 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
6 Hb_004994_100 0.0777925122 - - acyl-CoA thioesterase, putative [Ricinus communis]
7 Hb_002685_020 0.0823615943 - - -
8 Hb_000061_320 0.0831645458 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
9 Hb_008878_030 0.083450155 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
10 Hb_006400_030 0.0840458308 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
11 Hb_004837_140 0.0841714784 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
12 Hb_002477_070 0.0866393141 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
13 Hb_000107_620 0.087852124 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
14 Hb_001832_010 0.0882379377 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
15 Hb_004048_070 0.0882588043 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
16 Hb_003032_040 0.088575479 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
17 Hb_002449_020 0.0890327215 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
18 Hb_012338_010 0.0890906257 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000840_030 0.0895040098 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
20 Hb_000834_270 0.0897891832 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_026527_030 Hb_026527_030 Hb_000331_080 Hb_000331_080 Hb_026527_030--Hb_000331_080 Hb_024185_020 Hb_024185_020 Hb_026527_030--Hb_024185_020 Hb_002253_070 Hb_002253_070 Hb_026527_030--Hb_002253_070 Hb_009954_040 Hb_009954_040 Hb_026527_030--Hb_009954_040 Hb_004994_100 Hb_004994_100 Hb_026527_030--Hb_004994_100 Hb_002685_020 Hb_002685_020 Hb_026527_030--Hb_002685_020 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_002253_070--Hb_003032_040 Hb_005062_070 Hb_005062_070 Hb_002253_070--Hb_005062_070 Hb_000429_170 Hb_000429_170 Hb_002253_070--Hb_000429_170 Hb_001604_010 Hb_001604_010 Hb_002253_070--Hb_001604_010 Hb_001454_210 Hb_001454_210 Hb_002253_070--Hb_001454_210 Hb_003020_230 Hb_003020_230 Hb_009954_040--Hb_003020_230 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_004994_100--Hb_153112_020 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_001277_330 Hb_001277_330 Hb_004994_100--Hb_001277_330 Hb_034299_050 Hb_034299_050 Hb_004994_100--Hb_034299_050 Hb_002216_040 Hb_002216_040 Hb_002685_020--Hb_002216_040 Hb_019253_020 Hb_019253_020 Hb_002685_020--Hb_019253_020 Hb_004678_050 Hb_004678_050 Hb_002685_020--Hb_004678_050 Hb_000300_640 Hb_000300_640 Hb_002685_020--Hb_000300_640 Hb_000116_440 Hb_000116_440 Hb_002685_020--Hb_000116_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14471 2.10673 2.29769 3.13162 7.18764 5.72794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3015 8.91539 7.5395 4.46433 3.69209

CAGE analysis