Hb_000300_640

Information

Type -
Description -
Location Contig300: 587307-588723
Sequence    

Annotation

kegg
ID vvi:100855285
description uncharacterized LOC100855285
nr
ID XP_003632718.1
description PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9SHF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1120980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31636: 587153-588736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_640 0.0 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
2 Hb_000062_550 0.0775364778 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
3 Hb_001366_190 0.0796576751 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
4 Hb_000802_080 0.0902724076 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
5 Hb_002685_020 0.0955386561 - - -
6 Hb_000705_210 0.1009083754 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
7 Hb_000700_110 0.1009945695 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_007441_230 0.1025252256 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
9 Hb_011310_190 0.1027984235 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
10 Hb_000000_460 0.1028828464 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
11 Hb_005054_290 0.104108198 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
12 Hb_005305_080 0.1069457419 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_004705_100 0.1076395142 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
14 Hb_004724_420 0.1081253512 - - fucose synthetase, putative [Ricinus communis]
15 Hb_000003_480 0.1082765356 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
16 Hb_034350_010 0.109098316 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
17 Hb_093084_050 0.1091161346 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
18 Hb_003376_360 0.1098218222 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
19 Hb_003847_080 0.1101593136 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
20 Hb_000116_440 0.110203794 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_640 Hb_000300_640 Hb_000062_550 Hb_000062_550 Hb_000300_640--Hb_000062_550 Hb_001366_190 Hb_001366_190 Hb_000300_640--Hb_001366_190 Hb_000802_080 Hb_000802_080 Hb_000300_640--Hb_000802_080 Hb_002685_020 Hb_002685_020 Hb_000300_640--Hb_002685_020 Hb_000705_210 Hb_000705_210 Hb_000300_640--Hb_000705_210 Hb_000700_110 Hb_000700_110 Hb_000300_640--Hb_000700_110 Hb_000005_260 Hb_000005_260 Hb_000062_550--Hb_000005_260 Hb_000062_550--Hb_000802_080 Hb_003376_360 Hb_003376_360 Hb_000062_550--Hb_003376_360 Hb_005064_060 Hb_005064_060 Hb_000062_550--Hb_005064_060 Hb_000062_550--Hb_001366_190 Hb_000398_180 Hb_000398_180 Hb_001366_190--Hb_000398_180 Hb_001366_190--Hb_000802_080 Hb_007508_070 Hb_007508_070 Hb_001366_190--Hb_007508_070 Hb_028872_140 Hb_028872_140 Hb_001366_190--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_001366_190--Hb_001454_210 Hb_005305_080 Hb_005305_080 Hb_001366_190--Hb_005305_080 Hb_001789_090 Hb_001789_090 Hb_000802_080--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000802_080--Hb_002811_360 Hb_001663_030 Hb_001663_030 Hb_000802_080--Hb_001663_030 Hb_001301_200 Hb_001301_200 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_026527_030 Hb_026527_030 Hb_002685_020--Hb_026527_030 Hb_002216_040 Hb_002216_040 Hb_002685_020--Hb_002216_040 Hb_019253_020 Hb_019253_020 Hb_002685_020--Hb_019253_020 Hb_004678_050 Hb_004678_050 Hb_002685_020--Hb_004678_050 Hb_000116_440 Hb_000116_440 Hb_002685_020--Hb_000116_440 Hb_000987_070 Hb_000987_070 Hb_000705_210--Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_012053_070 Hb_012053_070 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_005431_010 Hb_005431_010 Hb_000705_210--Hb_005431_010 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.6994 51.0584 9.26497 72.6109 79.1902 82.8018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
132.448 91.4167 91.5002 53.97 31.6066

CAGE analysis