Hb_004678_050

Information

Type -
Description -
Location Contig4678: 50309-54254
Sequence    

Annotation

kegg
ID rcu:RCOM_0452810
description o-sialoglycoprotein endopeptidase, putative (EC:3.4.24.57)
nr
ID XP_012065184.1
description PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
swissprot
ID Q0VCI1
description Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Bos taurus GN=OSGEP PE=2 SV=1
trembl
ID A0A067L9F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20863 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable trna n6-adenosine threonylcarbamoyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44140: 50442-50997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_050 0.0 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
2 Hb_001360_050 0.0711473689 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_000025_120 0.0854190347 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
4 Hb_012675_060 0.0857209405 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
5 Hb_000834_270 0.0857342789 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
6 Hb_020419_010 0.0873208682 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
7 Hb_003020_230 0.0879240414 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
8 Hb_024185_020 0.0882463651 - - -
9 Hb_000625_070 0.0885580201 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
10 Hb_001833_110 0.0895961732 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027073_040 0.091236281 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
12 Hb_000496_060 0.0912790302 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
13 Hb_002216_040 0.0924417919 - - PREDICTED: protein PRD1 [Jatropha curcas]
14 Hb_004724_340 0.0925415314 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_000170_010 0.0933287903 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_155764_010 0.0937038644 - - -
17 Hb_002061_040 0.0941281128 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
18 Hb_002685_020 0.095247136 - - -
19 Hb_000696_310 0.0954758884 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
20 Hb_002963_010 0.0957719106 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004678_050 Hb_004678_050 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_000025_120 Hb_000025_120 Hb_004678_050--Hb_000025_120 Hb_012675_060 Hb_012675_060 Hb_004678_050--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_004678_050--Hb_000834_270 Hb_020419_010 Hb_020419_010 Hb_004678_050--Hb_020419_010 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000025_120--Hb_000834_270 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_002600_100 Hb_002600_100 Hb_020419_010--Hb_002600_100 Hb_020419_010--Hb_014720_080 Hb_020419_010--Hb_000496_060 Hb_002411_200 Hb_002411_200 Hb_020419_010--Hb_002411_200 Hb_020419_010--Hb_000025_120 Hb_005997_010 Hb_005997_010 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40434 2.4685 1.06652 3.11733 4.15408 6.18007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1808 10.4919 9.12415 6.34093 3.77021

CAGE analysis