Hb_000613_140

Information

Type -
Description -
Location Contig613: 108145-112580
Sequence    

Annotation

kegg
ID rcu:RCOM_0691140
description tryptophan biosynthesis protein, trpc, putative (EC:4.1.1.48)
nr
ID XP_012081510.1
description PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
swissprot
ID P49572
description Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2
trembl
ID B9T1U0
description Tryptophan biosynthesis protein, trpc, putative OS=Ricinus communis GN=RCOM_0691140 PE=3 SV=1
Gene Ontology
ID GO:0004425
description indole-3-glycerol phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51083: 108236-112584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_140 0.0 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
2 Hb_000720_120 0.061864156 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
3 Hb_003020_230 0.0623823227 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
4 Hb_004223_280 0.064999219 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_000926_250 0.0666256077 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
6 Hb_003615_010 0.0672241523 - - 60S ribosomal protein L8, putative [Ricinus communis]
7 Hb_000510_130 0.0682075893 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_001048_020 0.0690171915 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
9 Hb_002963_010 0.0697123492 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
10 Hb_032717_080 0.0697163771 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
11 Hb_001377_290 0.0704190965 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
12 Hb_002078_150 0.07100296 - - protein with unknown function [Ricinus communis]
13 Hb_001138_050 0.071723765 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
14 Hb_000815_040 0.0736060627 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
15 Hb_012022_030 0.0736486792 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
16 Hb_011689_080 0.0740713362 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
17 Hb_028872_140 0.0751487883 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
18 Hb_003392_040 0.0753235654 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
19 Hb_159809_020 0.0754562194 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_033834_040 0.0759876844 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000613_140 Hb_000613_140 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_005997_010 Hb_005997_010 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_004223_280--Hb_000510_130 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_003615_010--Hb_000926_250 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1669 16.1508 12.1961 15.7977 27.6677 41.3704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.9492 51.6045 36.5797 25.5445 9.62747

CAGE analysis