Hb_002137_020

Information

Type -
Description -
Location Contig2137: 41151-42602
Sequence    

Annotation

kegg
ID rcu:RCOM_0609820
description ubiquitin-protein ligase, putative
nr
ID XP_002521998.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID B9S7M9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0609820 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box fbd lrr-repeat protein at1g13570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22083: 40053-41234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002137_020 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004223_280 0.0429994793 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
3 Hb_007441_230 0.0621690797 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
4 Hb_000571_120 0.0663731667 - - importin beta-1, putative [Ricinus communis]
5 Hb_012022_030 0.0690113051 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
6 Hb_003464_060 0.075701066 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
7 Hb_002016_110 0.0782054189 - - transducin family protein [Populus trichocarpa]
8 Hb_001477_130 0.0785466786 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
9 Hb_000805_020 0.0789419705 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_005305_080 0.0802471367 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
11 Hb_005357_030 0.0812938957 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
12 Hb_000696_340 0.0822842071 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
13 Hb_002026_180 0.0839992283 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_007441_200 0.0845543564 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_002685_170 0.0856675143 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
16 Hb_015292_030 0.086279212 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
17 Hb_028872_140 0.0877677217 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
18 Hb_000510_130 0.0877693419 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
19 Hb_000291_110 0.0891155264 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_189003_080 0.0894056612 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002137_020 Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_000805_020 Hb_000805_020 Hb_007441_230--Hb_000805_020 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_200 Hb_007441_200 Hb_007441_230--Hb_007441_200 Hb_007441_230--Hb_000571_120 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000571_120--Hb_000805_020 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_012022_030--Hb_004223_280 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_012022_030--Hb_000571_120 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_003464_060--Hb_002026_180 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_002016_110--Hb_000030_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73983 4.35854 1.46451 2.02265 4.99534 6.42903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88414 5.9549 6.15568 4.48977 1.96946

CAGE analysis