Hb_000953_020

Information

Type -
Description -
Location Contig953: 23833-33059
Sequence    

Annotation

kegg
ID rcu:RCOM_0382890
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012072957.1
description PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067KMG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06746 PE=3 SV=1
Gene Ontology
ID GO:0005789
description serine threonine-protein kinase ctr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63449: 32147-32957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_020 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
2 Hb_007416_280 0.0649112646 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000510_130 0.06607798 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
4 Hb_002026_180 0.0701278892 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
5 Hb_000571_120 0.0701317157 - - importin beta-1, putative [Ricinus communis]
6 Hb_004032_150 0.0734846893 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
7 Hb_020956_020 0.078670076 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
8 Hb_001489_150 0.0787255372 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
9 Hb_002477_330 0.0791162864 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
10 Hb_017224_030 0.0792443816 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
11 Hb_148644_010 0.0806715529 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_011883_010 0.0814681016 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
13 Hb_010504_020 0.0825829387 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_004767_100 0.083749138 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_001898_220 0.0855750376 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
16 Hb_003092_040 0.0856865956 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
17 Hb_000035_320 0.0861547783 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
18 Hb_005291_030 0.0883864367 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
19 Hb_040575_010 0.0885659963 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
20 Hb_000045_090 0.0887584884 - - PREDICTED: syntaxin-31 [Jatropha curcas]

Gene co-expression network

sample Hb_000953_020 Hb_000953_020 Hb_007416_280 Hb_007416_280 Hb_000953_020--Hb_007416_280 Hb_000510_130 Hb_000510_130 Hb_000953_020--Hb_000510_130 Hb_002026_180 Hb_002026_180 Hb_000953_020--Hb_002026_180 Hb_000571_120 Hb_000571_120 Hb_000953_020--Hb_000571_120 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_020956_020 Hb_020956_020 Hb_000953_020--Hb_020956_020 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_007416_280--Hb_004032_150 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_004032_150--Hb_001489_150 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_020956_020--Hb_005305_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.348 11.6996 5.67029 10.1591 8.2752 21.0987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6431 15.5369 15.7899 9.44221 5.05134

CAGE analysis