Hb_029866_090

Information

Type -
Description -
Location Contig29866: 67548-70023
Sequence    

Annotation

kegg
ID rcu:RCOM_1581330
description hypothetical protein
nr
ID XP_012090133.1
description PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RIN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581330 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-associated translation elongation factor ef1b protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31215: 67537-69991
cDNA
(Sanger)
(ID:Location)		 028_P02.ab1: 67537-69784 , 036_L24.ab1: 67537-69836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_090 0.0 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
2 Hb_000876_070 0.0640125402 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_020956_020 0.0658174645 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
4 Hb_001552_020 0.0663103127 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
5 Hb_003057_100 0.0714985102 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
6 Hb_002739_100 0.071773958 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
7 Hb_005539_350 0.074153259 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010504_020 0.0758201237 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_031527_040 0.0763523059 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
10 Hb_000705_210 0.0771302608 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
11 Hb_007691_030 0.0777397614 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
12 Hb_000510_130 0.0785194469 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
13 Hb_005305_080 0.0795991153 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
14 Hb_000416_040 0.0801941856 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
15 Hb_002813_040 0.0810504127 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
16 Hb_000676_180 0.0821383952 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
17 Hb_002375_070 0.0831485686 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001195_600 0.0836790487 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
19 Hb_005779_060 0.0837578458 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
20 Hb_004635_100 0.0837885643 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029866_090 Hb_029866_090 Hb_000876_070 Hb_000876_070 Hb_029866_090--Hb_000876_070 Hb_020956_020 Hb_020956_020 Hb_029866_090--Hb_020956_020 Hb_001552_020 Hb_001552_020 Hb_029866_090--Hb_001552_020 Hb_003057_100 Hb_003057_100 Hb_029866_090--Hb_003057_100 Hb_002739_100 Hb_002739_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000510_130 Hb_000510_130 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_003057_100--Hb_032202_190 Hb_003057_100--Hb_005305_080 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330 Hb_002739_100--Hb_005779_060 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2145 25.342 17.1715 23.3194 29.6601 31.644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.6428 47.4762 39.2988 12.013 16.5213

CAGE analysis