Hb_002007_060

Information

Type -
Description -
Location Contig2007: 24685-27675
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02670g
description hypothetical protein
nr
ID KDP23490.1
description hypothetical protein JCGZ_23323 [Jatropha curcas]
swissprot
ID Q93VB2
description Autophagy-related protein 18a OS=Arabidopsis thaliana GN=ATG18A PE=1 SV=1
trembl
ID A0A067JU14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23323 PE=4 SV=1
Gene Ontology
ID GO:0005515
description autophagy-related protein 18a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20361: 24746-25990 , PASA_asmbl_20362: 25754-27277 , PASA_asmbl_20363: 26459-26914 , PASA_asmbl_20364: 28271-29531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_060 0.0 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
2 Hb_023226_040 0.0537771864 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
3 Hb_000866_270 0.055111428 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_001259_090 0.0607394447 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
5 Hb_001301_160 0.0615458633 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
6 Hb_000000_160 0.0628445161 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_005539_350 0.063404565 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001269_680 0.0641783609 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
9 Hb_001252_110 0.0643974263 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
10 Hb_000661_250 0.0644580171 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
11 Hb_011360_140 0.0644980002 - - 40S ribosomal protein S19, putative [Ricinus communis]
12 Hb_004657_050 0.06491632 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
13 Hb_028995_040 0.0687546967 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
14 Hb_002968_060 0.0694250584 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
15 Hb_002301_140 0.0701412517 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
16 Hb_002868_010 0.0704291454 - - 60S ribosomal protein L30, putative [Ricinus communis]
17 Hb_000473_040 0.0711280171 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
18 Hb_135545_010 0.0714088967 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_003687_110 0.0729140339 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
20 Hb_000103_560 0.0739354461 - - ADP-ribosylation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_060 Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_023226_040--Hb_000000_160 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_000866_270--Hb_001259_090 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001259_090--Hb_000661_250 Hb_096563_010 Hb_096563_010 Hb_001259_090--Hb_096563_010 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_001301_160--Hb_096563_010 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2009 16.5562 15.619 13.3653 26.1465 31.7853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9641 46.7436 27.8681 10.4581 8.64834

CAGE analysis