Hb_000494_020

Information

Type -
Description -
Location Contig494: 19845-22693
Sequence    

Annotation

kegg
ID pmum:103331595
description actin-related protein 2/3 complex subunit 5A
nr
ID XP_012083666.1
description PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
swissprot
ID Q9M117
description Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A PE=1 SV=2
trembl
ID M5WAX3
description Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215mg PE=3 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45395: 19840-22629
cDNA
(Sanger)
(ID:Location)		 025_P01.ab1: 19893-22629 , 047_A02.ab1: 19893-22629

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_020 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
2 Hb_010407_040 0.0530873522 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
3 Hb_002105_090 0.0590303154 - - Rab4 [Hevea brasiliensis]
4 Hb_003363_110 0.0635510273 - - protein with unknown function [Ricinus communis]
5 Hb_000933_180 0.0650540299 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
6 Hb_000163_160 0.0676116086 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
7 Hb_001246_090 0.0695975088 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
8 Hb_011360_140 0.0710017677 - - 40S ribosomal protein S19, putative [Ricinus communis]
9 Hb_000103_560 0.0714042476 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_003058_130 0.0715535241 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
11 Hb_000000_160 0.0717277819 - - PREDICTED: membrin-11 [Jatropha curcas]
12 Hb_003392_040 0.0720912172 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
13 Hb_001184_090 0.0725141362 - - PREDICTED: TIP41-like protein [Jatropha curcas]
14 Hb_000832_140 0.0726023888 - - actin depolymerizing factor 4 [Hevea brasiliensis]
15 Hb_011689_080 0.0736998836 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
16 Hb_063716_050 0.0738061566 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
17 Hb_000107_050 0.0745829831 - - 60S ribosomal protein L9, putative [Ricinus communis]
18 Hb_007576_040 0.0745880088 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
19 Hb_004800_230 0.0753807561 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
20 Hb_002233_150 0.0755253375 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]

Gene co-expression network

sample Hb_000494_020 Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_002105_090--Hb_010407_040 Hb_028841_030 Hb_028841_030 Hb_003363_110--Hb_028841_030 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_005186_050 Hb_005186_050 Hb_003363_110--Hb_005186_050 Hb_003363_110--Hb_145880_030 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_000163_160--Hb_002105_090 Hb_000163_160--Hb_000000_160 Hb_001135_050 Hb_001135_050 Hb_001246_090--Hb_001135_050 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_003392_040 Hb_003392_040 Hb_001246_090--Hb_003392_040 Hb_001246_090--Hb_002105_090 Hb_001246_090--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.5132 18.5912 35.1063 30.1026 59.1531 63.8672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.3614 89.4238 45.4992 29.0042 12.2685

CAGE analysis