Hb_028841_030

Information

Type -
Description -
Location Contig28841: 24558-26410
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30099: 23208-26316 , PASA_asmbl_30100: 24321-26316 , PASA_asmbl_30101: 24653-26008
cDNA
(Sanger)
(ID:Location)		 007_E05.ab1: 24322-26316 , 017_N01.ab1: 24321-26219 , 023_N14.ab1: 23208-26241 , 030_P11.ab1: 24322-26316

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028841_030 0.0 - - -
2 Hb_003363_110 0.0641509976 - - protein with unknown function [Ricinus communis]
3 Hb_005186_050 0.0738006704 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
4 Hb_011381_060 0.0775748016 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
5 Hb_003607_150 0.0776115939 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
6 Hb_007154_020 0.0855175855 - - -
7 Hb_003069_010 0.087282598 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
8 Hb_007441_210 0.0916343596 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
9 Hb_010407_040 0.091735511 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
10 Hb_008112_040 0.0930036867 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
11 Hb_002374_170 0.0949341308 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
12 Hb_004531_070 0.0953321254 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
13 Hb_000251_070 0.0958036138 - - hypothetical protein L484_010641 [Morus notabilis]
14 Hb_004738_080 0.0977866539 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
15 Hb_000141_040 0.097883153 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
16 Hb_000395_290 0.0985884616 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
17 Hb_001459_080 0.0991719056 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_002811_260 0.1008475676 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_013405_060 0.1016542847 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
20 Hb_145880_030 0.1022980241 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]

Gene co-expression network

sample Hb_028841_030 Hb_028841_030 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_028841_030--Hb_011381_060 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_000494_020 Hb_000494_020 Hb_003363_110--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_003363_110--Hb_010407_040 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_003363_110--Hb_005186_050 Hb_145880_030 Hb_145880_030 Hb_003363_110--Hb_145880_030 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_011381_060--Hb_007154_020 Hb_011381_060--Hb_145880_030 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_003607_150--Hb_003069_010 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_003607_150--Hb_007154_020 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_007154_020--Hb_001512_060 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_003069_010--Hb_010661_030 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2200.45 452.887 1418.36 676.458 1311.74 1335.77
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1523.85 2877 1019.65 441.442 342.411

CAGE analysis