Hb_002685_040

Information

Type -
Description -
Location Contig2685: 40173-43746
Sequence    

Annotation

kegg
ID cit:102620764
description hypothetical protein
nr
ID XP_006449364.1
description hypothetical protein CICLE_v10017252mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4W8Q0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017252mg PE=4 SV=1
Gene Ontology
ID GO:0006661
description hypothetical protein CICLE_v10017252mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27947: 35775-39740 , PASA_asmbl_27948: 35775-39754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_040 0.0 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
2 Hb_005186_050 0.0750533578 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
3 Hb_003607_150 0.0755694458 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
4 Hb_001832_060 0.079870813 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
5 Hb_001662_070 0.0808369282 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
6 Hb_004195_270 0.0878237388 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
7 Hb_000622_180 0.0894604373 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
8 Hb_000362_200 0.0895102521 - - exonuclease family protein [Populus trichocarpa]
9 Hb_000787_050 0.0896971387 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
10 Hb_000251_070 0.0907635021 - - hypothetical protein L484_010641 [Morus notabilis]
11 Hb_000347_540 0.0940007352 - - protein binding protein, putative [Ricinus communis]
12 Hb_025645_010 0.094589497 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
13 Hb_000141_040 0.0946540091 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
14 Hb_001195_480 0.0953407447 - - cop9 complex subunit, putative [Ricinus communis]
15 Hb_004934_030 0.0956916047 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
16 Hb_001534_120 0.0966940589 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
17 Hb_004453_170 0.0978321911 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
18 Hb_001579_030 0.09812362 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_004116_190 0.0998564392 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_004678_040 0.1011612441 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002685_040 Hb_002685_040 Hb_005186_050 Hb_005186_050 Hb_002685_040--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_002685_040--Hb_003607_150 Hb_001832_060 Hb_001832_060 Hb_002685_040--Hb_001832_060 Hb_001662_070 Hb_001662_070 Hb_002685_040--Hb_001662_070 Hb_004195_270 Hb_004195_270 Hb_002685_040--Hb_004195_270 Hb_000622_180 Hb_000622_180 Hb_002685_040--Hb_000622_180 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_003607_150--Hb_003069_010 Hb_003607_150--Hb_000251_070 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_000193_110 Hb_000193_110 Hb_000622_180--Hb_000193_110 Hb_029388_020 Hb_029388_020 Hb_000622_180--Hb_029388_020 Hb_001195_480 Hb_001195_480 Hb_000622_180--Hb_001195_480 Hb_000236_390 Hb_000236_390 Hb_000622_180--Hb_000236_390 Hb_021068_040 Hb_021068_040 Hb_000622_180--Hb_021068_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2794 5.45773 12.1975 8.02877 10.063 6.56485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7604 21.5021 12.8348 6.14068 5.81852

CAGE analysis