Hb_001832_060

Information

Type -
Description -
Location Contig1832: 44662-49297
Sequence    

Annotation

kegg
ID csv:101222719
description translation machinery-associated protein 22-like
nr
ID XP_012076942.1
description PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
swissprot
ID O42929
description Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=3 SV=1
trembl
ID A0A067KNI1
description Translation machinery-associated protein 22 OS=Jatropha curcas GN=JCGZ_07411 PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation machinery-associated protein 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17885: 44869-49247
cDNA
(Sanger)
(ID:Location)		 008_F17.ab1: 47744-49247 , 041_L21.ab1: 47762-49247

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_060 0.0 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
2 Hb_004453_170 0.067387384 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
3 Hb_000698_030 0.0681462118 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
4 Hb_000127_180 0.0706595694 - - 40S ribosomal protein S18, putative [Ricinus communis]
5 Hb_004116_190 0.0722781727 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_001047_230 0.0726508048 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001269_630 0.0733717001 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
8 Hb_022425_040 0.075343417 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
9 Hb_000462_130 0.0773083635 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
10 Hb_000608_370 0.0780295897 - - acyl-carrier-protein [Triadica sebifera]
11 Hb_003656_070 0.0796460852 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
12 Hb_002685_040 0.079870813 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
13 Hb_002995_020 0.0802564873 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
14 Hb_000676_180 0.0811839973 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
15 Hb_129204_030 0.0816081118 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
16 Hb_000217_030 0.0830436825 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
17 Hb_030736_080 0.0832121966 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002768_030 0.0838156343 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
19 Hb_007416_030 0.0840159213 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
20 Hb_002686_020 0.0840814195 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001832_060 Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_028995_040 Hb_028995_040 Hb_000698_030--Hb_028995_040 Hb_000698_030--Hb_000462_130 Hb_000698_030--Hb_001269_630 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_001504_110 Hb_001504_110 Hb_000127_180--Hb_001504_110 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_003656_070 Hb_003656_070 Hb_001047_230--Hb_003656_070 Hb_000608_370 Hb_000608_370 Hb_001047_230--Hb_000608_370 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_129204_030 Hb_129204_030 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_007416_030 Hb_007416_030 Hb_001047_230--Hb_007416_030 Hb_002110_120 Hb_002110_120 Hb_001269_630--Hb_002110_120 Hb_007317_150 Hb_007317_150 Hb_001269_630--Hb_007317_150 Hb_001269_630--Hb_003656_070 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1494 15.242 21.9634 16.327 24.2714 15.7989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1747 58.473 28.557 14.9211 10.5615

CAGE analysis