Hb_000260_550

Information

Type -
Description -
Location Contig260: 374375-376605
Sequence    

Annotation

kegg
ID vvi:100257471
description 60S ribosomal protein L13-1
nr
ID XP_012090947.1
description PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
swissprot
ID P41128
description 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
trembl
ID A0A067JD82
description 60S ribosomal protein L13 OS=Jatropha curcas GN=JCGZ_00588 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l13-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27014: 374384-376588 , PASA_asmbl_27015: 375319-375663
cDNA
(Sanger)
(ID:Location)		 009_F01.ab1: 374622-376581 , 029_P09.ab1: 374625-376588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_550 0.0 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
2 Hb_000096_170 0.0615347651 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
3 Hb_007044_130 0.0666331832 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
4 Hb_004453_170 0.0735069981 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
5 Hb_000127_180 0.0801179584 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_002518_080 0.0801503765 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
7 Hb_124953_020 0.0834420898 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
8 Hb_001141_140 0.0861146155 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_000264_210 0.0865956711 - - tfiih, polypeptide, putative [Ricinus communis]
10 Hb_003185_110 0.086606543 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
11 Hb_021419_020 0.0878373738 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
12 Hb_022425_040 0.0889200295 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
13 Hb_000035_370 0.0892721215 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001016_150 0.0908515733 - - Rop1 [Hevea brasiliensis]
15 Hb_000506_070 0.0911934735 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
16 Hb_001143_220 0.0917894956 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
17 Hb_001832_060 0.0922473543 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
18 Hb_002811_260 0.0929122691 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_001195_480 0.0934385421 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_000527_060 0.0935438382 - - Protein C20orf11, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_550 Hb_000260_550 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_000096_170--Hb_007044_130 Hb_000395_290 Hb_000395_290 Hb_000096_170--Hb_000395_290 Hb_022425_040 Hb_022425_040 Hb_000096_170--Hb_022425_040 Hb_004223_040 Hb_004223_040 Hb_000096_170--Hb_004223_040 Hb_002232_040 Hb_002232_040 Hb_000096_170--Hb_002232_040 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_000127_180--Hb_002518_080 Hb_001504_110 Hb_001504_110 Hb_000127_180--Hb_001504_110 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_002518_080--Hb_022425_040 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_015279_010 Hb_015279_010 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_002518_080--Hb_001504_110 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.4003 41.8372 86.1622 53.1356 57.2709 53.2724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3813 193.014 60.2683 47.4847 21.9997

CAGE analysis