Hb_001863_430

Information

Type -
Description -
Location Contig1863: 357261-361800
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17110g
description POPTRDRAFT_1078275; hypothetical protein
nr
ID XP_011004797.1
description PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
swissprot
ID Q9S9Z7
description Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=2 SV=1
trembl
ID B9H730
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s17110g PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18372: 357332-361964 , PASA_asmbl_18373: 359565-359835 , PASA_asmbl_18374: 357393-361989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_430 0.0 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
2 Hb_001016_150 0.065499543 - - Rop1 [Hevea brasiliensis]
3 Hb_000506_070 0.0675629794 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_002078_140 0.0677039745 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_002811_170 0.0706606246 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
6 Hb_000327_230 0.0725176013 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_001691_140 0.0741595018 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
8 Hb_003226_100 0.0744168641 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
9 Hb_007747_050 0.0750670986 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
10 Hb_000465_390 0.0754356515 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
11 Hb_001476_080 0.0754770906 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
12 Hb_011671_100 0.0775777351 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_000331_470 0.0778480998 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
14 Hb_124953_020 0.0784537544 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
15 Hb_000005_090 0.0787898043 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
16 Hb_000136_260 0.0790861916 - - 40S ribosomal protein S5A [Hevea brasiliensis]
17 Hb_000217_030 0.0792625451 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
18 Hb_001341_150 0.0811885911 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
19 Hb_000001_060 0.0813358158 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
20 Hb_000172_320 0.0816726497 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001863_430 Hb_001863_430 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_001016_150--Hb_002811_170 Hb_001016_150--Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_003018_020 Hb_003018_020 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140 Hb_002078_140--Hb_124953_020 Hb_002078_140--Hb_001691_140 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000099_150 Hb_000099_150 Hb_000327_230--Hb_000099_150 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_000327_230--Hb_001016_150 Hb_001691_140--Hb_000099_150 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2248 8.66379 12.163 13.7193 8.15465 10.6925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4717 36.1379 10.2524 13.1376 8.88277

CAGE analysis