Hb_011671_100

Information

Type -
Description -
Location Contig11671: 101883-103775
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05640g
description 60S ribosomal protein L15
nr
ID XP_002301250.1
description 60S ribosomal protein L15 [Populus trichocarpa]
swissprot
ID O82528
description 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1
trembl
ID B9GPA1
description Ribosomal protein L15 OS=Populus trichocarpa GN=POPTR_0002s14250g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05137: 102248-104081
cDNA
(Sanger)
(ID:Location)		 019_L12.ab1: 102456-104081 , 025_N04.ab1: 102311-104037 , 031_P13.ab1: 102631-104027 , 032_O06.ab1: 102488-104081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_100 0.0 - - 60S ribosomal protein L15 [Populus trichocarpa]
2 Hb_001691_140 0.0681550621 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
3 Hb_003787_010 0.0698677168 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
4 Hb_000172_320 0.0705251506 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
5 Hb_015279_010 0.0705379807 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
6 Hb_004767_080 0.073886951 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
7 Hb_000417_360 0.0760370199 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
8 Hb_002078_140 0.0766646885 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
9 Hb_091433_020 0.0775716829 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
10 Hb_001863_430 0.0775777351 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
11 Hb_000920_110 0.0780833667 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
12 Hb_000441_110 0.0786343258 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
13 Hb_000496_120 0.0787576623 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
14 Hb_000217_030 0.0822820428 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
15 Hb_000009_460 0.084068211 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006478_150 0.0851079329 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
17 Hb_004143_150 0.0863614999 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
18 Hb_022425_040 0.0882055102 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
19 Hb_000815_060 0.0896706432 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
20 Hb_000069_420 0.0914421294 - - Beclin-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_011671_100 Hb_011671_100 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_002078_140 Hb_002078_140 Hb_001691_140--Hb_002078_140 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_003787_010--Hb_015279_010 Hb_002056_050 Hb_002056_050 Hb_000172_320--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_000172_320--Hb_002043_130 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_000172_320--Hb_002078_140 Hb_000172_320--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_015279_010--Hb_000920_110 Hb_005305_150 Hb_005305_150 Hb_004767_080--Hb_005305_150 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_091433_020 Hb_091433_020 Hb_004767_080--Hb_091433_020 Hb_004767_080--Hb_000417_360 Hb_004767_080--Hb_002056_050 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000417_360--Hb_091433_020 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.8961 73.0604 56.8407 83.1913 64.1528 72.7409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.696 238.574 98.6024 97.261 42.8953

CAGE analysis