Hb_005305_150

Information

Type -
Description -
Location Contig5305: 80741-82789
Sequence    

Annotation

kegg
ID rcu:RCOM_1577470
description 40S ribosomal protein S2, putative
nr
ID XP_012090022.1
description PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
swissprot
ID Q9SCM3
description 40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1
trembl
ID A0A067JQ34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25936 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s2-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47347: 80736-82780
cDNA
(Sanger)
(ID:Location)		 006_N18.ab1: 80750-81038 , 009_H20.ab1: 82059-82741

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_150 0.0 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
2 Hb_003098_020 0.0594255421 - - 40S ribosomal protein S5B [Hevea brasiliensis]
3 Hb_004767_080 0.0595634104 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
4 Hb_004216_050 0.0602555514 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
5 Hb_001545_170 0.0758067246 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_000496_120 0.0783667755 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
7 Hb_001814_050 0.0821737921 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_012490_070 0.0841344687 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004567_120 0.084496109 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
10 Hb_005914_010 0.0863082717 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
11 Hb_000136_350 0.0911921926 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
12 Hb_001989_090 0.091545406 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
13 Hb_007441_040 0.09261729 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
14 Hb_010068_020 0.0929109536 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
15 Hb_002183_060 0.0932319899 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
16 Hb_000735_090 0.0937281036 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
17 Hb_005914_170 0.0945846174 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
18 Hb_033642_080 0.0947122303 - - V-type proton ATPase subunit E [Hevea brasiliensis]
19 Hb_011671_100 0.0949417448 - - 60S ribosomal protein L15 [Populus trichocarpa]
20 Hb_091433_020 0.0950209105 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005305_150 Hb_005305_150 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_004767_080 Hb_004767_080 Hb_005305_150--Hb_004767_080 Hb_004216_050 Hb_004216_050 Hb_005305_150--Hb_004216_050 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_000496_120 Hb_000496_120 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_091433_020 Hb_091433_020 Hb_004767_080--Hb_091433_020 Hb_011671_100 Hb_011671_100 Hb_004767_080--Hb_011671_100 Hb_000417_360 Hb_000417_360 Hb_004767_080--Hb_000417_360 Hb_002056_050 Hb_002056_050 Hb_004767_080--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_004216_050--Hb_004567_120 Hb_006478_150 Hb_006478_150 Hb_004216_050--Hb_006478_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_004216_050--Hb_000496_120 Hb_004216_050--Hb_004767_080 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_000496_120--Hb_001814_050 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.9532 33.2246 42.315 78.3289 47.7998 76.4594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.6142 183.626 94.2116 117.423 48.0835

CAGE analysis