Hb_003098_020

Information

Type -
Description -
Location Contig3098: 28846-31421
Sequence    

Annotation

kegg
ID rcu:RCOM_0408940
description 40S ribosomal protein S5, putative
nr
ID ADR71287.1
description 40S ribosomal protein S5B [Hevea brasiliensis]
swissprot
ID Q9ZUT9
description 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1
trembl
ID I3NMQ0
description 40S ribosomal protein S5B OS=Hevea brasiliensis GN=RPS5B PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32751: 28835-31333 , PASA_asmbl_32752: 18840-31326 , PASA_asmbl_32753: 18866-31356
cDNA
(Sanger)
(ID:Location)		 026_C17.ab1: 28835-30900 , 042_C03.ab1: 28843-31167 , 052_J21.ab1: 28843-31189

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003098_020 0.0 - - 40S ribosomal protein S5B [Hevea brasiliensis]
2 Hb_005305_150 0.0594255421 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
3 Hb_186982_040 0.069022554 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
4 Hb_000136_350 0.0701976934 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
5 Hb_000210_120 0.0796637235 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
6 Hb_000896_040 0.0827307599 - - BnaC02g13240D [Brassica napus]
7 Hb_005914_170 0.086856084 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
8 Hb_004216_050 0.0927574565 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
9 Hb_004767_080 0.0942888268 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
10 Hb_006698_030 0.0954800515 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
11 Hb_001545_170 0.0965156756 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
12 Hb_008232_010 0.0975037031 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
13 Hb_104265_040 0.0975103445 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007928_030 0.0977347178 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
15 Hb_000922_040 0.0977431148 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
16 Hb_005307_050 0.0978666725 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
17 Hb_033642_080 0.1002384296 - - V-type proton ATPase subunit E [Hevea brasiliensis]
18 Hb_005914_010 0.1003678767 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
19 Hb_000538_120 0.1003728715 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
20 Hb_000103_270 0.1008530533 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_003098_020 Hb_003098_020 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_004767_080 Hb_004767_080 Hb_005305_150--Hb_004767_080 Hb_004216_050 Hb_004216_050 Hb_005305_150--Hb_004216_050 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_000496_120 Hb_000496_120 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_186982_040--Hb_000136_350 Hb_000538_120 Hb_000538_120 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_000210_120--Hb_005914_170 Hb_000103_270 Hb_000103_270 Hb_000210_120--Hb_000103_270 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000210_120--Hb_000136_350 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000417_260 Hb_000417_260 Hb_000896_040--Hb_000417_260 Hb_091433_020 Hb_091433_020 Hb_000896_040--Hb_091433_020 Hb_004672_010 Hb_004672_010 Hb_000896_040--Hb_004672_010 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6061 21.3378 28.0495 53.6261 21.6335 40.1269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.021 103.6 56.1431 79.4573 30.8258

CAGE analysis