Hb_001814_050

Information

Type -
Description -
Location Contig1814: 42951-46681
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_479363
description single-strand-binding family protein
nr
ID XP_012092942.1
description PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q84J78
description Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1
trembl
ID A0A067J8I3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05840 PE=4 SV=1
Gene Ontology
ID GO:0003697
description single-stranded dna-binding mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17641: 42934-46659
cDNA
(Sanger)
(ID:Location)		 042_O16.ab1: 42934-45282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001814_050 0.0 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_006816_530 0.0567212563 - - 60S ribosomal protein L18, putative [Ricinus communis]
3 Hb_004375_100 0.0667578059 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
4 Hb_004157_030 0.06708033 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_009793_010 0.0711704026 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
6 Hb_002043_130 0.0715302582 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
7 Hb_001505_020 0.0720679091 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
8 Hb_007441_040 0.0729341328 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
9 Hb_000134_070 0.0774467144 - - 60S ribosomal protein L6, putative [Ricinus communis]
10 Hb_010068_020 0.0780566244 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
11 Hb_000496_120 0.0781358959 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
12 Hb_000136_170 0.0814659989 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
13 Hb_000172_320 0.0816239854 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
14 Hb_009051_030 0.0816764823 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
15 Hb_000270_370 0.0820833411 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
16 Hb_005305_150 0.0821737921 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
17 Hb_002713_070 0.0822593252 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
18 Hb_002660_030 0.0823470512 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000152_420 0.0834304967 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
20 Hb_001057_040 0.0854580914 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]

Gene co-expression network

sample Hb_001814_050 Hb_001814_050 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_010068_020 Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_004375_100--Hb_002713_070 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_004375_100--Hb_001505_020 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_000172_320 Hb_000172_320 Hb_002043_130--Hb_000172_320 Hb_002043_130--Hb_010068_020 Hb_002043_130--Hb_009793_010 Hb_002043_130--Hb_004375_100 Hb_011150_010 Hb_011150_010 Hb_002043_130--Hb_011150_010 Hb_001505_020--Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3258 3.06228 3.64038 7.57147 4.87072 9.38568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8329 21.0555 8.32122 8.44959 3.3206

CAGE analysis