Hb_001214_160

Information

Type -
Description -
Location Contig1214: 155494-155934
Sequence    

Annotation

kegg
ID csv:101228988
description 60S ribosomal protein L27a-3-like
nr
ID ADR71245.1
description 60S ribosomal protein L27B [Hevea brasiliensis]
swissprot
ID P48160
description 60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1
trembl
ID I3NMK8
description 60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06562: 155466-156088
cDNA
(Sanger)
(ID:Location)		 004_J20.ab1: 155471-156037 , 016_A03.ab1: 155466-156080 , 043_B04.ab1: 155471-156037

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_160 0.0 - - 60S ribosomal protein L27B [Hevea brasiliensis]
2 Hb_003226_210 0.0460319264 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
3 Hb_006816_530 0.0697416815 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_000363_480 0.0725990924 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
5 Hb_000102_020 0.0768700007 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
6 Hb_011628_040 0.0784880136 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_004125_110 0.0804986041 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_001505_020 0.0815841047 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
9 Hb_007441_040 0.0821753409 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
10 Hb_002660_030 0.0841997307 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_420 0.0842506876 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
12 Hb_000134_070 0.0852377417 - - 60S ribosomal protein L6, putative [Ricinus communis]
13 Hb_001814_050 0.089471848 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000526_040 0.0898744774 - - 60S ribosomal protein L6, putative [Ricinus communis]
15 Hb_000283_110 0.0908788346 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
16 Hb_001369_640 0.0917087216 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
17 Hb_006541_010 0.0918065003 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
18 Hb_011311_010 0.0921957043 - - 60S ribosomal protein L27C [Hevea brasiliensis]
19 Hb_000617_090 0.0925655554 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
20 Hb_000441_190 0.0928429668 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_001214_160 Hb_001214_160 Hb_003226_210 Hb_003226_210 Hb_001214_160--Hb_003226_210 Hb_006816_530 Hb_006816_530 Hb_001214_160--Hb_006816_530 Hb_000363_480 Hb_000363_480 Hb_001214_160--Hb_000363_480 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_003226_210--Hb_000363_480 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_000215_060 Hb_000215_060 Hb_000363_480--Hb_000215_060 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_007441_040 Hb_007441_040 Hb_000102_020--Hb_007441_040 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000656_170 Hb_000656_170 Hb_000102_020--Hb_000656_170 Hb_009182_010 Hb_009182_010 Hb_000102_020--Hb_009182_010 Hb_003203_040 Hb_003203_040 Hb_011628_040--Hb_003203_040 Hb_005511_160 Hb_005511_160 Hb_011628_040--Hb_005511_160 Hb_003893_050 Hb_003893_050 Hb_011628_040--Hb_003893_050 Hb_011628_040--Hb_001505_020 Hb_005063_050 Hb_005063_050 Hb_011628_040--Hb_005063_050 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_004125_110--Hb_003226_210 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_004125_110--Hb_000134_070 Hb_004125_110--Hb_002660_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
166.736 87.849 126.141 176.842 98.7081 271.969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
368.496 638.468 291.586 157.538 53.2594

CAGE analysis