Hb_009182_010

Information

Type -
Description -
Location Contig9182: 8488-9310
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06870g
description POPTRDRAFT_558455; HISTIDINOL DEHYDROGENASE family protein
nr
ID XP_012064631.1
description PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
swissprot
ID Q9FY89
description Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
trembl
ID A0A067LAQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22917 PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 20 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009182_010 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
2 Hb_007441_040 0.0546410492 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
3 Hb_000102_020 0.0759156346 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
4 Hb_143766_010 0.0771204827 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
5 Hb_000982_090 0.0814304497 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
6 Hb_091433_020 0.0818196545 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_004157_030 0.0827251969 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_004767_080 0.0829444361 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
9 Hb_001484_070 0.0850281236 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000189_240 0.0857760952 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_004889_010 0.0864778928 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
12 Hb_004055_070 0.0871266469 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
13 Hb_000608_310 0.0881075895 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000505_040 0.0886091445 - - -
15 Hb_006541_010 0.0891423363 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
16 Hb_005551_040 0.0915037263 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_007012_060 0.0918720841 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
18 Hb_004102_070 0.0925403617 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
19 Hb_001814_050 0.094763023 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_006915_040 0.0954133679 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]

Gene co-expression network

sample Hb_009182_010 Hb_009182_010 Hb_007441_040 Hb_007441_040 Hb_009182_010--Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_009182_010--Hb_000102_020 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030 Hb_007441_040--Hb_000102_020 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_000656_170 Hb_000656_170 Hb_007441_040--Hb_000656_170 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000102_020--Hb_000656_170 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_143766_010--Hb_007012_060 Hb_004102_070 Hb_004102_070 Hb_143766_010--Hb_004102_070 Hb_027654_050 Hb_027654_050 Hb_143766_010--Hb_027654_050 Hb_010175_040 Hb_010175_040 Hb_143766_010--Hb_010175_040 Hb_021596_090 Hb_021596_090 Hb_143766_010--Hb_021596_090 Hb_172426_040 Hb_172426_040 Hb_000982_090--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_000982_090--Hb_001140_370 Hb_001124_090 Hb_001124_090 Hb_000982_090--Hb_001124_090 Hb_006059_050 Hb_006059_050 Hb_000982_090--Hb_006059_050 Hb_001016_030 Hb_001016_030 Hb_000982_090--Hb_001016_030 Hb_000982_090--Hb_009051_030 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11359 2.11669 6.35803 6.35106 2.73162 7.39382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8217 16.8775 8.99536 7.2929 3.60333

CAGE analysis