Hb_001016_030

Information

Type -
Description -
Location Contig1016: 40553-42494
Sequence    

Annotation

kegg
ID vvi:100267639
description uncharacterized LOC100267639
nr
ID XP_012075228.1
description PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LME1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00750: 40611-42497
cDNA
(Sanger)
(ID:Location)		 031_J07.ab1: 40611-42497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001016_030 0.0 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
2 Hb_001140_370 0.0598393244 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
3 Hb_001616_040 0.0609071566 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
4 Hb_000201_120 0.0675688361 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
5 Hb_001421_060 0.0683118909 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
6 Hb_003126_090 0.0692341163 - - Rop1 [Hevea brasiliensis]
7 Hb_002830_020 0.0721054054 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_001318_250 0.0751180223 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
9 Hb_033594_110 0.0753842837 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
10 Hb_005278_020 0.0760356444 - - PREDICTED: sorcin-like [Jatropha curcas]
11 Hb_012022_120 0.0761605069 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
12 Hb_015807_040 0.0775904235 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
13 Hb_000982_090 0.0778628996 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
14 Hb_000373_120 0.0787324061 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
15 Hb_000926_300 0.0789813149 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
16 Hb_000331_450 0.0789836116 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
17 Hb_000934_250 0.0792927467 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
18 Hb_000996_140 0.0795967048 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
19 Hb_128048_010 0.0799648442 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_032202_090 0.0818116882 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001016_030 Hb_001016_030 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020 Hb_024071_020 Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_000201_120--Hb_002830_020 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_003126_090--Hb_002830_020 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_002830_020--Hb_003581_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.4122 29.2431 51.6946 77.9315 64.9246 86.7474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.914 170.111 74.831 48.3345 44.1911

CAGE analysis