Hb_006816_530

Information

Type -
Description -
Location Contig6816: 332568-337666
Sequence    

Annotation

kegg
ID csv:101228164
description uncharacterized LOC101228164
nr
ID XP_002512455.1
description 60S ribosomal protein L18, putative [Ricinus communis]
swissprot
ID P42791
description 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2
trembl
ID B9RFD6
description 60S ribosomal protein L18, putative OS=Ricinus communis GN=RCOM_1433890 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53861: 332741-334680 , PASA_asmbl_53862: 332763-334680
cDNA
(Sanger)
(ID:Location)		 012_N01.ab1: 332753-334680 , 024_O19.ab1: 334239-334677 , 029_A03.ab1: 333929-334680 , 041_M05.ab1: 332752-334680 , 042_E09.ab1: 332763-334680 , 050_N02.ab1: 332843-334680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_530 0.0 - - 60S ribosomal protein L18, putative [Ricinus communis]
2 Hb_001814_050 0.0567212563 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001505_020 0.0614329588 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
4 Hb_003226_210 0.0657438187 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
5 Hb_001214_160 0.0697416815 - - 60S ribosomal protein L27B [Hevea brasiliensis]
6 Hb_002713_070 0.0714392964 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
7 Hb_001421_060 0.0726099406 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
8 Hb_000086_550 0.074299751 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_001433_050 0.0745779987 - - 60S ribosomal protein L18, putative [Ricinus communis]
10 Hb_000024_030 0.0746130836 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
11 Hb_004375_100 0.0757657115 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
12 Hb_006541_010 0.0777224996 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
13 Hb_000136_170 0.0780633881 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
14 Hb_009051_030 0.0790815872 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
15 Hb_005736_060 0.0795667554 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
16 Hb_000574_480 0.0800235674 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_009554_010 0.0807169089 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
18 Hb_000270_370 0.0811185384 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
19 Hb_007441_040 0.0812989628 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
20 Hb_002660_030 0.0813845443 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006816_530 Hb_006816_530 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001814_050--Hb_001505_020 Hb_001505_020--Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_001214_160--Hb_000363_480 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110 Hb_002713_070--Hb_000136_170 Hb_002713_070--Hb_002660_030 Hb_002713_070--Hb_004375_100 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
189.531 87.2403 92.554 175.698 130.742 297.292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
405.118 586.526 259.275 214.993 86.583

CAGE analysis