Hb_000134_070

Information

Type -
Description -
Location Contig134: 41950-43685
Sequence    

Annotation

kegg
ID rcu:RCOM_0647900
description 60S ribosomal protein L6, putative
nr
ID XP_002524802.1
description 60S ribosomal protein L6, putative [Ricinus communis]
swissprot
ID P34091
description 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1
trembl
ID B9SFN3
description 60S ribosomal protein L6 OS=Ricinus communis GN=RCOM_0647900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09587: 41846-43813 , PASA_asmbl_09588: 41880-43219
cDNA
(Sanger)
(ID:Location)		 019_O14.ab1: 41880-43224 , 030_A23.ab1: 41887-43279 , 038_F04.ab1: 41885-43660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_070 0.0 - - 60S ribosomal protein L6, putative [Ricinus communis]
2 Hb_000136_170 0.0613785804 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
3 Hb_002660_030 0.0670820974 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003226_210 0.0679610633 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
5 Hb_004157_030 0.0715484963 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
6 Hb_086639_090 0.0738910967 - - 60S ribosomal protein L7a, putative [Ricinus communis]
7 Hb_001505_020 0.0752769658 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
8 Hb_001814_050 0.0774467144 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_179296_010 0.0821196728 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
10 Hb_006541_010 0.0825145799 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
11 Hb_004125_110 0.0827577849 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
12 Hb_003893_050 0.0832951243 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_000265_050 0.0840639184 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
14 Hb_001214_160 0.0852377417 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_008921_020 0.0859589384 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
16 Hb_002713_070 0.0865882655 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
17 Hb_000441_190 0.0872569598 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
18 Hb_005357_130 0.0883603045 - - hypothetical protein L484_012905 [Morus notabilis]
19 Hb_006816_530 0.0883903871 - - 60S ribosomal protein L18, putative [Ricinus communis]
20 Hb_005063_050 0.0884773573 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_070 Hb_000134_070 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_000134_070--Hb_002660_030 Hb_003226_210 Hb_003226_210 Hb_000134_070--Hb_003226_210 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_001505_020 Hb_001505_020 Hb_000134_070--Hb_001505_020 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_002660_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_002660_030--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002925_030 Hb_002925_030 Hb_002660_030--Hb_002925_030 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_086639_090--Hb_000676_160 Hb_086639_090--Hb_000136_170 Hb_004543_040 Hb_004543_040 Hb_086639_090--Hb_004543_040 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_086639_090--Hb_004567_120 Hb_001505_020--Hb_006816_530 Hb_001505_020--Hb_002713_070 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001505_020--Hb_001814_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
170.241 71.0037 131.22 228.274 138.37 323.043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.705 891.288 292.798 210.334 134.695

CAGE analysis