Hb_004543_040

Information

Type -
Description -
Location Contig4543: 80834-82820
Sequence    

Annotation

kegg
ID rcu:RCOM_0700470
description abc transporter, putative (EC:3.6.3.41)
nr
ID AIU41655.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9C8T1
description ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1
trembl
ID A0A097P9R6
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI1 PE=2 SV=1
Gene Ontology
ID GO:0030288
description abc transporter i family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43367: 81200-82969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004543_040 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000997_120 0.0805889491 - - 40S ribosomal protein S15E [Hevea brasiliensis]
3 Hb_086639_090 0.0814655206 - - 60S ribosomal protein L7a, putative [Ricinus communis]
4 Hb_091433_020 0.08410898 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
5 Hb_001369_170 0.0903273768 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
6 Hb_000496_120 0.0931440272 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
7 Hb_006478_150 0.0938089663 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
8 Hb_033642_080 0.0983069365 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_001085_270 0.0984956882 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
10 Hb_007120_090 0.0992838136 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_180074_010 0.0993035261 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
12 Hb_001565_080 0.104997221 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
13 Hb_001269_490 0.1055432332 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002006_130 0.1058085729 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
15 Hb_008921_020 0.1066508035 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
16 Hb_000735_040 0.1073399305 - - 60S ribosomal protein L32A [Hevea brasiliensis]
17 Hb_000788_010 0.1084763297 - - 40S ribosomal protein S16A [Hevea brasiliensis]
18 Hb_007245_080 0.1086755157 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_002235_080 0.1094108073 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
20 Hb_004125_110 0.10972776 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004543_040 Hb_004543_040 Hb_000997_120 Hb_000997_120 Hb_004543_040--Hb_000997_120 Hb_086639_090 Hb_086639_090 Hb_004543_040--Hb_086639_090 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_001369_170 Hb_001369_170 Hb_004543_040--Hb_001369_170 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_006478_150 Hb_006478_150 Hb_004543_040--Hb_006478_150 Hb_007120_090 Hb_007120_090 Hb_000997_120--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000997_120--Hb_002838_030 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_000134_070 Hb_000134_070 Hb_086639_090--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_086639_090--Hb_000676_160 Hb_000136_170 Hb_000136_170 Hb_086639_090--Hb_000136_170 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_086639_090--Hb_004567_120 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_001085_270 Hb_001085_270 Hb_001369_170--Hb_001085_270 Hb_000788_010 Hb_000788_010 Hb_001369_170--Hb_000788_010 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_000567_410 Hb_000567_410 Hb_001369_170--Hb_000567_410 Hb_001369_170--Hb_006478_150 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_006478_150--Hb_004567_120 Hb_006478_150--Hb_004216_050 Hb_006478_150--Hb_033642_080 Hb_006478_150--Hb_091433_020 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5354 2.05083 2.02829 2.93435 1.38807 3.09111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71879 12.45 3.53729 4.47103 1.24547

CAGE analysis