Hb_001085_270

Information

Type -
Description -
Location Contig1085: 213589-215217
Sequence    

Annotation

kegg
ID rcu:RCOM_1019840
description 60S ribosomal protein L13a, putative
nr
ID ADR71263.1
description 60S ribosomal protein L13aA [Hevea brasiliensis]
swissprot
ID Q9FKC0
description 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1
trembl
ID I3NMM6
description 60S ribosomal protein L13aA OS=Hevea brasiliensis GN=RPL13aA PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l13a-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02600: 214308-215294
cDNA
(Sanger)
(ID:Location)		 017_F24.ab1: 214528-215294 , 052_O13.ab1: 214308-215295

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_270 0.0 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
2 Hb_001369_170 0.059914411 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
3 Hb_000567_410 0.0692152797 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
4 Hb_000061_130 0.0719506641 - - rotamase, putative [Ricinus communis]
5 Hb_002909_130 0.0774413309 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_172221_010 0.0783484186 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
7 Hb_000193_120 0.0807370231 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
8 Hb_000062_390 0.0851995483 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
9 Hb_086639_090 0.0856686371 - - 60S ribosomal protein L7a, putative [Ricinus communis]
10 Hb_000093_110 0.0879044473 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
11 Hb_012395_130 0.0898255037 - - Os02g0814700 [Oryza sativa Japonica Group]
12 Hb_000881_080 0.0902423676 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005391_030 0.0911498619 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
14 Hb_006478_160 0.0918327689 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
15 Hb_006478_150 0.0920665896 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
16 Hb_000788_010 0.0925646753 - - 40S ribosomal protein S16A [Hevea brasiliensis]
17 Hb_000735_040 0.0949701507 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_002588_010 0.0951342908 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
19 Hb_032260_030 0.0954838664 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
20 Hb_000329_020 0.0968472572 - - cytoplasmic ribosomal protein S13 [Panax ginseng]

Gene co-expression network

sample Hb_001085_270 Hb_001085_270 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_000567_410 Hb_000567_410 Hb_001085_270--Hb_000567_410 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_000788_010 Hb_000788_010 Hb_001369_170--Hb_000788_010 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_001369_170--Hb_000567_410 Hb_004543_040 Hb_004543_040 Hb_001369_170--Hb_004543_040 Hb_006478_150 Hb_006478_150 Hb_001369_170--Hb_006478_150 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_027380_180 Hb_027380_180 Hb_000061_130--Hb_027380_180 Hb_000061_130--Hb_000193_120 Hb_001240_020 Hb_001240_020 Hb_000061_130--Hb_001240_020 Hb_000061_130--Hb_000567_410 Hb_000061_130--Hb_002909_130 Hb_002909_130--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_002909_130--Hb_000042_260 Hb_000329_020 Hb_000329_020 Hb_002909_130--Hb_000329_020 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_172221_010--Hb_000329_020 Hb_172221_010--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_172221_010--Hb_026398_010 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.8291 30.3974 57.4524 62.9587 49.1289 59.551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
171.278 381.572 132.042 114.35 57.231

CAGE analysis