Hb_008948_050

Information

Type -
Description -
Location Contig8948: 63132-66467
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06830g
description POPTRDRAFT_560603; hypothetical protein
nr
ID KDP32414.1
description hypothetical protein JCGZ_13339 [Jatropha curcas]
swissprot
ID B2G8V5
description 50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1
trembl
ID A0A067KKS1
description Ribosomal protein OS=Jatropha curcas GN=JCGZ_13339 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61719: 63225-66398 , PASA_asmbl_61720: 63258-66427 , PASA_asmbl_61721: 63843-63945 , PASA_asmbl_61722: 64686-64907
cDNA
(Sanger)
(ID:Location)		 008_K12.ab1: 63225-66398 , 035_L18.ab1: 63225-66398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_050 0.0 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
2 Hb_000645_140 0.0707533416 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
3 Hb_002588_010 0.0767527559 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001386_050 0.0793269299 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
5 Hb_000042_260 0.0823584984 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
6 Hb_002909_130 0.0835706109 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_019516_100 0.0853386093 - - 40S ribosomal protein S14, putative [Ricinus communis]
8 Hb_172221_010 0.08547059 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
9 Hb_000062_390 0.0867805473 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
10 Hb_000172_420 0.0868365628 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_000878_020 0.0882412289 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_000805_130 0.0935165875 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006588_080 0.0943829577 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
14 Hb_000915_120 0.0961552967 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
15 Hb_002811_080 0.0988513357 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
16 Hb_007575_070 0.1007928569 - - Histone H3.2 [Glycine soja]
17 Hb_009880_010 0.1034852158 - - PREDICTED: cytochrome c [Jatropha curcas]
18 Hb_011311_010 0.1039331352 - - 60S ribosomal protein L27C [Hevea brasiliensis]
19 Hb_002248_100 0.1045704446 - - hypothetical protein VITISV_027197 [Vitis vinifera]
20 Hb_000331_700 0.1057164169 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_050 Hb_008948_050 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_002588_010 Hb_002588_010 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_019516_100 Hb_019516_100 Hb_008948_050--Hb_019516_100 Hb_000093_110 Hb_000093_110 Hb_000645_140--Hb_000093_110 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_000645_140--Hb_019516_100 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_002909_130--Hb_172221_010 Hb_002909_130--Hb_000329_020 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_019516_100--Hb_000062_390 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9681 12.844 29.1305 22.6758 28.7006 23.6258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.0912 235.097 70.0369 34.2035 14.4923

CAGE analysis