Hb_002344_070

Information

Type -
Description -
Location Contig2344: 65433-69788
Sequence    

Annotation

kegg
ID rcu:RCOM_0711430
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_012077064.1
description PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
swissprot
ID Q9XG77
description Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1
trembl
ID A0A067KQ25
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_07500 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24585: 65384-69705
cDNA
(Sanger)
(ID:Location)		 005_O19.ab1: 65384-68974 , 044_O16.ab1: 65449-68964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_070 0.0 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
2 Hb_000258_280 0.0690106979 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
3 Hb_000878_020 0.0892228361 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
4 Hb_001386_050 0.0916556227 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
5 Hb_008948_050 0.1063425741 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
6 Hb_007497_030 0.1076452022 - - mutt domain protein, putative [Ricinus communis]
7 Hb_012053_010 0.1170461147 - - srpk, putative [Ricinus communis]
8 Hb_000239_030 0.117666402 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
9 Hb_006588_080 0.117970196 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
10 Hb_004735_050 0.1179721138 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
11 Hb_000203_020 0.1186340379 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_000915_120 0.1191821373 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
13 Hb_146225_010 0.1210458345 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_000331_700 0.1232723307 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_000123_160 0.1267526638 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_002909_130 0.1269895944 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_002217_450 0.1275000296 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
18 Hb_001225_010 0.1289643467 - - unnamed protein product [Coffea canephora]
19 Hb_002105_030 0.1295111139 - - -
20 Hb_003549_020 0.1303752684 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002344_070 Hb_002344_070 Hb_000258_280 Hb_000258_280 Hb_002344_070--Hb_000258_280 Hb_000878_020 Hb_000878_020 Hb_002344_070--Hb_000878_020 Hb_001386_050 Hb_001386_050 Hb_002344_070--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_002344_070--Hb_008948_050 Hb_007497_030 Hb_007497_030 Hb_002344_070--Hb_007497_030 Hb_012053_010 Hb_012053_010 Hb_002344_070--Hb_012053_010 Hb_003549_020 Hb_003549_020 Hb_000258_280--Hb_003549_020 Hb_000258_280--Hb_007497_030 Hb_000258_280--Hb_001386_050 Hb_000258_280--Hb_000878_020 Hb_004735_050 Hb_004735_050 Hb_000258_280--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_000878_020--Hb_006588_080 Hb_000110_170 Hb_000110_170 Hb_000878_020--Hb_000110_170 Hb_000878_020--Hb_001386_050 Hb_000878_020--Hb_008948_050 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_001386_050--Hb_008948_050 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_002588_010 Hb_002588_010 Hb_008948_050--Hb_002588_010 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_019516_100 Hb_019516_100 Hb_008948_050--Hb_019516_100 Hb_000331_700 Hb_000331_700 Hb_007497_030--Hb_000331_700 Hb_076626_010 Hb_076626_010 Hb_007497_030--Hb_076626_010 Hb_007497_030--Hb_002909_130 Hb_007497_030--Hb_003549_020 Hb_001863_400 Hb_001863_400 Hb_007497_030--Hb_001863_400 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_012053_010--Hb_000110_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1128 17.1309 23.6752 48.5859 45.4631 42.5558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.7376 406.862 125.964 35.8167 19.4966

CAGE analysis