Hb_002105_030

Information

Type -
Description -
Location Contig2105: 20831-23757
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21768: 22103-23745
cDNA
(Sanger)
(ID:Location)		 020_H18.ab1: 22188-23745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_030 0.0 - - -
2 Hb_001386_050 0.1117882068 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
3 Hb_012053_010 0.1146210847 - - srpk, putative [Ricinus communis]
4 Hb_001449_090 0.1288883899 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
5 Hb_002344_070 0.1295111139 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
6 Hb_146225_010 0.1300319521 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
7 Hb_000282_070 0.1314712892 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
8 Hb_000110_170 0.1326165893 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001863_420 0.13426186 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
10 Hb_138455_010 0.1345834944 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000878_020 0.137264959 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_012053_050 0.1424522881 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
13 Hb_062135_020 0.1434250961 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
14 Hb_001846_070 0.1463919142 - - PREDICTED: fructokinase-1 [Jatropha curcas]
15 Hb_001225_010 0.1485060356 - - unnamed protein product [Coffea canephora]
16 Hb_000123_160 0.1497342942 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_003326_020 0.151062162 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
18 Hb_002759_240 0.1543424651 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
19 Hb_001766_030 0.1546080581 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
20 Hb_000094_110 0.1546131584 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002105_030 Hb_002105_030 Hb_001386_050 Hb_001386_050 Hb_002105_030--Hb_001386_050 Hb_012053_010 Hb_012053_010 Hb_002105_030--Hb_012053_010 Hb_001449_090 Hb_001449_090 Hb_002105_030--Hb_001449_090 Hb_002344_070 Hb_002344_070 Hb_002105_030--Hb_002344_070 Hb_146225_010 Hb_146225_010 Hb_002105_030--Hb_146225_010 Hb_000282_070 Hb_000282_070 Hb_002105_030--Hb_000282_070 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_012053_010--Hb_002344_070 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_001307_210 Hb_001307_210 Hb_001449_090--Hb_001307_210 Hb_001225_010 Hb_001225_010 Hb_001449_090--Hb_001225_010 Hb_002909_130 Hb_002909_130 Hb_001449_090--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_001449_090--Hb_012395_130 Hb_011377_020 Hb_011377_020 Hb_001449_090--Hb_011377_020 Hb_001449_090--Hb_000878_020 Hb_000258_280 Hb_000258_280 Hb_002344_070--Hb_000258_280 Hb_002344_070--Hb_000878_020 Hb_002344_070--Hb_008948_050 Hb_007497_030 Hb_007497_030 Hb_002344_070--Hb_007497_030 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_005841_050 Hb_005841_050 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_000282_070--Hb_003326_020 Hb_000282_070--Hb_146225_010 Hb_006006_050 Hb_006006_050 Hb_000282_070--Hb_006006_050 Hb_001269_170 Hb_001269_170 Hb_000282_070--Hb_001269_170 Hb_007044_060 Hb_007044_060 Hb_000282_070--Hb_007044_060 Hb_002217_450 Hb_002217_450 Hb_000282_070--Hb_002217_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.3718 0.859617 1.6351 3.2612 1.91279 2.27338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.57062 40.127 15.3871 4.84787 4.03678

CAGE analysis